Polyphenol- and Glucuronoxylan-Rich Fiber Extract from Birch (Betula sp.) Wood Regulates Colonic Barrier Function and Cell Proliferation in Healthy Rats von Kynkäänniemi, Emma, Lindén, Jere, Ngambundit, Suchaya, Saarimäki, Laura A., Greco, Dario, Slaba, Hana, Lahtinen, Maarit H., Mikkonen, Kirsi S., Pajari, Anne-Maria

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Prospects and challenges for FAIR toxicogenomics data von Saarimäki, Laura A., Melagraki, Georgia, Afantitis, Antreas, Lynch, Iseult, Greco, Dario

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Computationally prioritized drugs inhibit SARS-CoV-2 infection and syncytia formation von Serra, Angela, Fratello, Michele, Federico, Antonio, Ojha, Ravi, Provenzani, Riccardo, Tasnadi, Ervin, Cattelani, Luca, del Giudice, Giusy, Kinaret, Pia A S, Saarimäki, Laura A, Pavel, Alisa, Kuivanen, Suvi, Cerullo, Vincenzo, Vapalahti, Olli, Horvath, Peter, Lieto, Antonio Di, Yli-Kauhaluoma, Jari, Balistreri, Giuseppe, Greco, Dario

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The potential of a data centred approach & knowledge graph data representation in chemical safety and drug design von Pavel, Alisa, Saarimäki, Laura A., Möbus, Lena, Federico, Antonio, Serra, Angela, Greco, Dario

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Factors Modulating COVID-19: A Mechanistic Understanding Based on the Adverse Outcome Pathway Framework von Clerbaux, Laure-Alix, Albertini, Maria Cristina, Amigó, Núria, Beronius, Anna, Bezemer, Gillina F. G., Coecke, Sandra, Daskalopoulos, Evangelos P., del Giudice, Giusy, Greco, Dario, Grenga, Lucia, Mantovani, Alberto, Muñoz, Amalia, Omeragic, Elma, Parissis, Nikolaos, Petrillo, Mauro, Saarimäki, Laura A., Soares, Helena, Sullivan, Kristie, Landesmann, Brigitte

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Toxicogenomics analysis of dynamic dose-response in macrophages highlights molecular alterations relevant for multi-walled carbon nanotube-induced lung fibrosis von Saarimäki, Laura A., Kinaret, Pia A.S., Scala, Giovanni, del Giudice, Giusy, Federico, Antonio, Serra, Angela, Greco, Dario

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Gene expression profiling of perfused placental tissue after copper oxide and nanoplastic particle treatment reveals particle-specific regulation of essential placental signaling p... von Buerki-Thurnherr, Tina, Chortarea, Savvina, Manser, Pius, Fortino, Vittorio, Saarimäki, Laura A., Greco, Dario, Wick, Peter

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FunMappOne: a tool to hierarchically organize and visually navigate functional gene annotations in multiple experiments von Scala, Giovanni, Serra, Angela, Marwah, Veer Singh, Saarimäki, Laura Aliisa, Greco, Dario

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Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials von Saarimäki, Laura Aliisa, Federico, Antonio, Lynch, Iseult, Papadiamantis, Anastasios G., Tsoumanis, Andreas, Melagraki, Georgia, Afantitis, Antreas, Serra, Angela, Greco, Dario

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Biomarkers of nanomaterials hazard from multi-layer data von Fortino, Vittorio, Kinaret, Pia Anneli Sofia, Fratello, Michele, Serra, Angela, Saarimäki, Laura Aliisa, Gallud, Audrey, Gupta, Govind, Vales, Gerard, Correia, Manuel, Rasool, Omid, Ytterberg, Jimmy, Monopoli, Marco, Skoog, Tiina, Ritchie, Peter, Moya, Sergio, Vázquez-Campos, Socorro, Handy, Richard, Grafström, Roland, Tran, Lang, Zubarev, Roman, Lahesmaa, Riitta, Dawson, Kenneth, Loeschner, Katrin, Larsen, Erik Husfeldt, Krombach, Fritz, Norppa, Hannu, Kere, Juha, Savolainen, Kai, Alenius, Harri, Fadeel, Bengt, Greco, Dario

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BMDx: a graphical Shiny application to perform Benchmark Dose analysis for transcriptomics data von Serra, Angela, Saarimäki, Laura Aliisa, Fratello, Michele, Marwah, Veer Singh, Greco, Dario

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Expanding adverse outcome pathways towards one health models for nanosafety von Saarimäki, Laura Aliisa, del Giudice, Giusy, Greco, Dario

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Identification of a Gene Signature Predicting (Nano)Particle-Induced Adverse Lung Outcome in Rats von Valentino, Sarah Amandine, Seidel, Carole, Lorcin, Mylène, Sébillaud, Sylvie, Wolff, Henrik, Grossmann, Stéphane, Viton, Stéphane, Nunge, Hervé, Saarimäki, Laura Aliisa, Greco, Dario, Cosnier, Frédéric, Gaté, Laurent

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A curated gene and biological system annotation of adverse outcome pathways related to human health von Saarimäki, Laura Aliisa, Fratello, Michele, Pavel, Alisa, Korpilähde, Seela, Leppänen, Jenni, Serra, Angela, Greco, Dario

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Microarray Data Preprocessing: From Experimental Design to Differential Analysis von Federico, Antonio, Saarimäki, Laura Aliisa, Serra, Angela, del Giudice, Giusy, Kinaret, Pia Anneli Sofia, Scala, Giovanni, Greco, Dario

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ESPERANTO: a GLP-field sEmi-SuPERvised toxicogenomics metadAta curatioN TOol von Di Lieto, Emanuele, Serra, Angela, Inkala, Simo Iisakki, Saarimäki, Laura Aliisa, del Giudice, Giusy, Fratello, Michele, Hautanen, Veera, Annala, Maria, Federico, Antonio, Greco, Dario

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A Network Toxicology Approach for Mechanistic Modelling of Nanomaterial Hazard and Adverse Outcomes von del Giudice, Giusy, Serra, Angela, Pavel, Alisa, Torres Maia, Marcella, Saarimäki, Laura Aliisa, Fratello, Michele, Federico, Antonio, Alenius, Harri, Fadeel, Bengt, Greco, Dario

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Nextcast: A software suite to analyse and model toxicogenomics data von Serra, Angela, Saarimäki, Laura Aliisa, Pavel, Alisa, del Giudice, Giusy, Fratello, Michele, Cattelani, Luca, Federico, Antonio, Laurino, Omar, Marwah, Veer Singh, Fortino, Vittorio, Scala, Giovanni, Sofia Kinaret, Pia Anneli, Greco, Dario

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Advancing chemical safety assessment through an omics-based characterization of the test system-chemical interaction von del Giudice, Giusy, Migliaccio, Giorgia, D’Alessandro, Nicoletta, Saarimäki, Laura Aliisa, Torres Maia, Marcella, Annala, Maria Emilia, Leppänen, Jenni, Mӧbus, Lena, Pavel, Alisa, Vaani, Maaret, Vallius, Anna, Ylä‐Outinen, Laura, Greco, Dario, Serra, Angela

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Characterization of ENM Dynamic Dose-Dependent MOA in Lung with Respect to Immune Cells Infiltration von Serra, Angela, del Giudice, Giusy, Kinaret, Pia Anneli Sofia, Saarimäki, Laura Aliisa, Poulsen, Sarah Søs, Fortino, Vittorio, Halappanavar, Sabina, Vogel, Ulla, Greco, Dario

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