OVOL2 induces mesenchymal-to-epithelial transition in fibroblasts and enhances cell-state reprogramming towards epithelial lineages von Watanabe, Kazuhide, Liu, Ye, Noguchi, Shuhei, Murray, Madeleine, Chang, Jen-Chien, Kishima, Mami, Nishimura, Hajime, Hashimoto, Kosuke, Minoda, Aki, Suzuki, Harukazu

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Deep phenotyping of myalgic encephalomyelitis/chronic fatigue syndrome in Japanese population von Kitami, Toshimori, Fukuda, Sanae, Kato, Tamotsu, Yamaguti, Kouzi, Nakatomi, Yasuhito, Yamano, Emi, Kataoka, Yosky, Mizuno, Kei, Tsuboi, Yuuri, Kogo, Yasushi, Suzuki, Harukazu, Itoh, Masayoshi, Morioka, Masaki Suimye, Kawaji, Hideya, Koseki, Haruhiko, Kikuchi, Jun, Hayashizaki, Yoshihide, Ohno, Hiroshi, Kuratsune, Hirohiko, Watanabe, Yasuyoshi

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Next-generation sequencing-based small RNA profiling of cerebrospinal fluid exosomes von Yagi, Yohsuke, Ohkubo, Takuya, Kawaji, Hideya, Machida, Akira, Miyata, Haruka, Goda, Saori, Roy, Sugata, Hayashizaki, Yoshihide, Suzuki, Harukazu, Yokota, Takanori

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A predictive computational framework for direct reprogramming between human cell types von Rackham, Owen J L, Firas, Jaber, Fang, Hai, Oates, Matt E, Holmes, Melissa L, Knaupp, Anja S, Suzuki, Harukazu, Nefzger, Christian M, Daub, Carsten O, Shin, Jay W, Petretto, Enrico, Forrest, Alistair R R, Hayashizaki, Yoshihide, Polo, Jose M, Gough, Julian

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FLI1 is associated with regulation of DNA methylation and megakaryocytic differentiation in FPDMM caused by a RUNX1 transactivation domain mutation von Tanaka, Yuki, Nakanishi, Yuri, Furuhata, Erina, Nakada, Ken-ichi, Maruyama, Rino, Suzuki, Harukazu, Suzuki, Takahiro

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Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance von Fort, Alexandre, Hashimoto, Kosuke, Yamada, Daisuke, Salimullah, Md, Keya, Chaman A, Saxena, Alka, Bonetti, Alessandro, Voineagu, Irina, Bertin, Nicolas, Kratz, Anton, Noro, Yukihiko, Wong, Chee-Hong, de Hoon, Michiel, Andersson, Robin, Sandelin, Albin, Suzuki, Harukazu, Wei, Chia-Lin, Koseki, Haruhiko, Hasegawa, Yuki, Forrest, Alistair R R, Carninci, Piero

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A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness von Burroughs, A Maxwell, Ando, Yoshinari, de Hoon, Michiel J L, Tomaru, Yasuhiro, Nishibu, Takahiro, Ukekawa, Ryo, Funakoshi, Taku, Kurokawa, Tsutomu, Suzuki, Harukazu, Hayashizaki, Yoshihide, Daub, Carsten O

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C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution von Kouno, Tsukasa, Moody, Jonathan, Kwon, Andrew Tae-Jun, Shibayama, Youtaro, Kato, Sachi, Huang, Yi, Böttcher, Michael, Motakis, Efthymios, Mendez, Mickaël, Severin, Jessica, Luginbühl, Joachim, Abugessaisa, Imad, Hasegawa, Akira, Takizawa, Satoshi, Arakawa, Takahiro, Furuno, Masaaki, Ramalingam, Naveen, West, Jay, Suzuki, Harukazu, Kasukawa, Takeya, Lassmann, Timo, Hon, Chung-Chau, Arner, Erik, Carninci, Piero, Plessy, Charles, Shin, Jay W.

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Targeting Batf2 for infectious diseases and cancer von Guler, Reto, Roy, Sugata, Suzuki, Harukazu, Brombacher, Frank

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Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin von Burroughs, Alexander Maxwell, Ando, Yoshinari, de Hoon, Michiel Laurens, Tomaru, Yasuhiro, Suzuki, Harukazu, Hayashizaki, Yoshihide, Daub, Carsten Olivier

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Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages von Roy, Sugata, Schmeier, Sebastian, Kaczkowski, Bogumil, Arner, Erik, Alam, Tanvir, Ozturk, Mumin, Tamgue, Ousman, Parihar, Suraj P., Kawaji, Hideya, Itoh, Masayoshi, Lassmann, Timo, Carninci, Piero, Hayashizaki, Yoshihide, Forrest, Alistair R. R., Guler, Reto, Bajic, Vladimir B., Brombacher, Frank, Suzuki, Harukazu

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Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages von Schroder, Kate, Irvine, Katharine M., Taylor, Martin S., Bokil, Nilesh J., Le Cao, Kim-Anh, Masterman, Kelly-Anne, Labzin, Larisa I., Semple, Colin A., Kapetanovic, Ronan, Fairbairn, Lynsey, Akalin, Altuna, Faulkner, Geoffrey J., Baillie, John Kenneth, Gongora, Milena, Daub, Carsten O., Kawaji, Hideya, McLachlan, Geoffrey J., Goldman, Nick, Grimmond, Sean M., Carninci, Piero, Suzuki, Harukazu, Hayashizaki, Yoshihide, Lenhard, Boris, Hume, David A., Sweet, Matthew J.

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Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection von Denisenko, Elena, Guler, Reto, Mhlanga, Musa, Suzuki, Harukazu, Brombacher, Frank, Schmeier, Sebastian

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Global analysis of pre-mRNA subcellular localization following splicing inhibition by spliceostatin A von Yoshimoto, Rei, Kaida, Daisuke, Furuno, Masaaki, Burroughs, A Maxwell, Noma, Shohei, Suzuki, Harukazu, Kawamura, Yumi, Hayashizaki, Yoshihide, Mayeda, Akila, Yoshida, Minoru

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A screening system to identify transcription factors that induce binding site-directed DNA demethylation von Suzuki, Takahiro, Maeda, Shiori, Furuhata, Erina, Shimizu, Yuri, Nishimura, Hajime, Kishima, Mami, Suzuki, Harukazu

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xcore: an R package for inference of gene expression regulators von Migdał, Maciej, Arakawa, Takahiro, Takizawa, Satoshi, Furuno, Masaaki, Suzuki, Harukazu, Arner, Erik, Winata, Cecilia Lanny, Kaczkowski, Bogumił

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Prediction of transcription factors associated with DNA demethylation during human cellular development von Miyajima, Yurina, Noguchi, Shuhei, Tanaka, Yuki, Li, Jing-Ru, Nishimura, Hajime, Kishima, Mami, Lim, Joanne, Furuhata, Erina, Suzuki, Takahiro, Kasukawa, Takeya, Suzuki, Harukazu

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Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection von Roy, Sugata, Guler, Reto, Parihar, Suraj P, Schmeier, Sebastian, Kaczkowski, Bogumil, Nishimura, Hajime, Shin, Jay W, Negishi, Yutaka, Ozturk, Mumin, Hurdayal, Ramona, Kubosaki, Atsutaka, Kimura, Yasumasa, de Hoon, Michiel J L, Hayashizaki, Yoshihide, Brombacher, Frank, Suzuki, Harukazu

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Combinatorial perturbation analysis reveals divergent regulations of mesenchymal genes during epithelial-to-mesenchymal transition von Watanabe, Kazuhide, Panchy, Nicholas, Noguchi, Shuhei, Suzuki, Harukazu, Hong, Tian

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Transcriptome analysis of long non-coding RNAs in Mycobacterium avium complex-infected macrophages von Yoshida, Mitsunori, Kwon, Andrew Taejun, Qin, Xian-Yang, Nishimura, Hajime, Maeda, Shiori, Miyamoto, Yuji, Yoshida, Yasuhiro, Hoshino, Yoshihiko, Suzuki, Harukazu

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