Characterizing the ecological and evolutionary dynamics of cancer von Zahir, Nastaran, Sun, Ruping, Gallahan, Daniel, Gatenby, Robert A., Curtis, Christina

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The deubiquitinase USP11 ameliorates intervertebral disc degeneration by regulating oxidative stress-induced ferroptosis via deubiquitinating and stabilizing Sirt3 von Zhu, Jian, Sun, Ruping, Sun, Kaiqiang, Yan, Chen, Jiang, Jialin, Kong, Fanqi, Shi, Jiangang

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Promoter of lncRNA Gene PVT1 Is a Tumor-Suppressor DNA Boundary Element von Cho, Seung Woo, Xu, Jin, Sun, Ruping, Mumbach, Maxwell R., Carter, Ava C., Chen, Y. Grace, Yost, Kathryn E., Kim, Jeewon, He, Jing, Nevins, Stephanie A., Chin, Suet-Feung, Caldas, Carlos, Liu, S. John, Horlbeck, Max A., Lim, Daniel A., Weissman, Jonathan S., Curtis, Christina, Chang, Howard Y.

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Clonal replacement and heterogeneity in breast tumors treated with neoadjuvant HER2-targeted therapy von Caswell-Jin, Jennifer L., McNamara, Katherine, Reiter, Johannes G., Sun, Ruping, Hu, Zheng, Ma, Zhicheng, Ding, Jie, Suarez, Carlos J., Tilk, Susanne, Raghavendra, Akshara, Forte, Victoria, Chin, Suet-Feung, Bardwell, Helen, Provenzano, Elena, Caldas, Carlos, Lang, Julie, West, Robert, Tripathy, Debu, Press, Michael F., Curtis, Christina

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Elements and evolutionary determinants of genomic divergence between paired primary and metastatic tumors von Sun, Ruping, Nikolakopoulos, Athanasios N

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Evolving copy number gains promote tumor expansion and bolster mutational diversification von Wang, Zicheng, Xia, Yunong, Mills, Lauren, Nikolakopoulos, Athanasios N., Maeser, Nicole, Dehm, Scott M., Sheltzer, Jason M., Sun, Ruping

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Somatic variant detection from multi-sampled genomic sequencing data of tumor specimens using the ith.Variant pipeline von Maeser, Nicole, Khan, Aziz, Sun, Ruping

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Quantitative evidence for early metastatic seeding in colorectal cancer von Hu, Zheng, Ding, Jie, Ma, Zhicheng, Sun, Ruping, Seoane, Jose A., Scott Shaffer, J., Suarez, Carlos J., Berghoff, Anna S., Cremolini, Chiara, Falcone, Alfredo, Loupakis, Fotios, Birner, Peter, Preusser, Matthias, Lenz, Heinz-Josef, Curtis, Christina

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Centrosomal Protein 55 (CEP55) Drives Immune Exclusion and Resistance to Immune Checkpoint Inhibitors in Colorectal Cancer von Wangmo, Dechen, Gates, Travis J, Zhao, Xianda, Sun, Ruping, Subramanian, Subbaya

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Publisher Correction: Clonal replacement and heterogeneity in breast tumors treated with neoadjuvant HER2-targeted therapy von Caswell-Jin, Jennifer L., McNamara, Katherine, Reiter, Johannes G., Sun, Ruping, Hu, Zheng, Ma, Zhicheng, Ding, Jie, Suarez, Carlos J., Tilk, Susanne, Raghavendra, Akshara, Forte, Victoria, Chin, Suet-Feung, Bardwell, Helen, Provenzano, Elena, Caldas, Carlos, Lang, Julie, West, Robert, Tripathy, Debu, Press, Michael F., Curtis, Christina

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Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS von EMDE, Anne-Katrin, SCHULZ, Marcel H, WEESE, David, RUPING SUN, VINGRON, Martin, KALSCHEUER, Vera M, HAAS, Stefan A, REINERT, Knut

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Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours von Sun, Ruping, Fu, Xuping, Li, Yao, Xie, Yi, Mao, Yumin

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A population genetics perspective on the determinants of intra-tumor heterogeneity von Hu, Zheng, Sun, Ruping, Curtis, Christina

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Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads von RUPING SUN, LOVE, Michael I, ZEMOJTEL, Tomasz, EMDE, Anne-Katrin, CHUNG, Ho-Ryun, VINGRON, Martin, HAAS, Stefan A

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Big Bang Tumor Growth and Clonal Evolution von Sun, Ruping, Hu, Zheng, Curtis, Christina

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Parameter estimation from single patient, single time-point sequencing data of recurrent tumors von Leder, Kevin, Sun, Ruping, Wang, Zicheng, Zhang, Xuanming

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Hesperidin mitigates oxidative stress-induced ferroptosis in nucleus pulposus cells via Nrf2/NF-κB axis to protect intervertebral disc from degeneration von Zhu, Jian, Sun, Ruping, Yan, Chen, Sun, Kaiqiang, Gao, Lu, Zheng, Bing, Shi, Jiangang

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Quantitative evidence for early metastatic seeding in colorectal cancer von Hu, Zheng, Ding, Jie, Ma, Zhicheng, Sun, Ruping, Seoane, Jose A., Scott Shaffer, J., Suarez, Carlos J., Berghoff, Anna S., Cremolini, Chiara, Falcone, Alfredo, Loupakis, Fotios, Birner, Peter, Preusser, Matthias, Lenz, Heinz-Josef, Curtis, Christina

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Between-region genetic divergence reflects the mode and tempo of tumor evolution von Sun, Ruping, Hu, Zheng, Sottoriva, Andrea, Graham, Trevor A, Harpak, Arbel, Ma, Zhicheng, Fischer, Jared M, Shibata, Darryl, Curtis, Christina

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Oncogene-like addiction to aneuploidy in human cancers von Girish, Vishruth, Lakhani, Asad A, Thompson, Sarah L, Scaduto, Christine M, Brown, Leanne M, Hagenson, Ryan A, Sausville, Erin L, Mendelson, Brianna E, Kandikuppa, Pranav K, Lukow, Devon A, Yuan, Monet Lou, Stevens, Eric C, Lee, Sophia N, Schukken, Klaske M, Akalu, Saron M, Vasudevan, Anand, Zou, Charles, Salovska, Barbora, Li, Wenxue, Smith, Joan C, Taylor, Alison M, Martienssen, Robert A, Liu, Yansheng, Sun, Ruping, Sheltzer, Jason M

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