Computation of topographic and three-dimensional atomic force microscopy images of biopolymers by calculating forces von Sumikama, Takashi

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Conductance selectivity of Na⁺ across the K⁺ channel via Na⁺ trapped in a tortuous trajectory von Mita, Kenichiro, Sumikama, Takashi, Iwamoto, Masayuki, Matsuki, Yuka, Shigemi, Kenji, Oiki, Shigetoshi

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The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel von Irie, Katsumasa, Oda, Yoshinori, Sumikama, Takashi, Oshima, Atsunori, Fujiyoshi, Yoshinori

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Queueing arrival and release mechanism for K+ permeation through a potassium channel von Sumikama, Takashi, Oiki, Shigetoshi

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Digitalized K+ Occupancy in the Nanocavity Holds and Releases Queues of K+ in a Channel von Sumikama, Takashi, Oiki, Shigetoshi

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Induced-Fit Pathway Accelerated Binding of Agitoxin-2 to A K+ Channel Imaged by HS-AFM von Sumino, Ayumi, Sumikama, Takashi, Uchihashi, Takayuki, Oiki, Shigetoshi

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Computing Atomic Force Microscopy Images of Chromosomes using Polymer Simulation von Sumikama, Takashi, Foster, Adam S., Fukuma, Takeshi

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Updating view of membrane transport proteins by simulation studies von Sumikama, Takashi, Corry, Ben, Ono, Junichi, Kobayashi, Chigusa, Okazaki, Kei-ichi

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Origin of the Shape of Current-Voltage Curve through Nanopores: A Molecular Dynamics Study von Sumikama, Takashi

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Voltage sensors of a Na+ channel dissociate from the pore domain and form inter-channel dimers in the resting state von Sumino, Ayumi, Sumikama, Takashi, Shibata, Mikihiro, Irie, Katsumasa

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Computational biophysics of atomic force microscopy—an IUPAB-sponsored workshop von Hall, Damien, Flechsig, Holger, Sumikama, Takashi

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Biophysical Reviews Issue Focus call: Computational biophysics of atomic force microscopy von Sumikama, Takashi, Hall, Damien, Flechsig, Holger

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Cycle flux algebra for ion and water flux through the KcsA channel single-file pore links microscopic trajectories and macroscopic observables von Oiki, Shigetoshi, Iwamoto, Masayuki, Sumikama, Takashi

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Dependency of Ion Permeation Pattern on K+ Concentration through the Kv1.2 Channel von Sumikama, Takashi, Saito, Shinji, Oiki, Shigetoshi

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Capturing the Freeze-Drying Dynamics of NaCl Nanoparticles Using THz Spectroscopy von Ajito, Katsuhiro, Ueno, Yuko, Kim, Jae-Young, Sumikama, Takashi

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Structure and dynamics of solvent molecules inside the polytheonamide B channel in different environments: a molecular dynamics study von Kalathingal, Mahroof, Sumikama, Takashi, Mori, Toshifumi, Oiki, Shigetoshi, Saito, Shinji

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Mechanism of ion permeation through a model channel: roles of energetic and entropic contributions von Sumikama, Takashi, Saito, Shinji, Ohmine, Iwao

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Computed Three-Dimensional Atomic Force Microscopy Images of Biopolymers Using the Jarzynski Equality von Sumikama, Takashi, Federici Canova, Filippo, Gao, David Z., Penedo, Marcos, Miyazawa, Keisuke, Foster, Adam S., Fukuma, Takeshi

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A mesoscopic approach to understanding the mechanisms underlying the ion permeation on the discrete-state diagram von Oiki, Shigetoshi, Iwamoto, Masayuki, Sumikama, Takashi

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Mechanism of Ion Permeation in a Model Channel:  Free Energy Surface and Dynamics of K+ Ion Transport in an Anion-Doped Carbon Nanotube von Sumikama, Takashi, Saito, Shinji, Ohmine, Iwao

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