Long-read metagenomics using PromethION uncovers oral bacteriophages and their interaction with host bacteria von Yahara, Koji, Suzuki, Masato, Hirabayashi, Aki, Suda, Wataru, Hattori, Masahira, Suzuki, Yutaka, Okazaki, Yusuke

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Gut microorganisms act together to exacerbate inflammation in spinal cords von Miyauchi, Eiji, Kim, Seok-Won, Suda, Wataru, Kawasumi, Masami, Onawa, Satoshi, Taguchi-Atarashi, Naoko, Morita, Hidetoshi, Taylor, Todd D., Hattori, Masahira, Ohno, Hiroshi

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The gut microbiome of healthy Japanese and its microbial and functional uniqueness von Nishijima, Suguru, Suda, Wataru, Oshima, Kenshiro, Kim, Seok-Won, Hirose, Yuu, Morita, Hidetoshi, Hattori, Masahira

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Dysbiosis in the Gut Microbiota of Patients with Multiple Sclerosis, with a Striking Depletion of Species Belonging to Clostridia XIVa and IV Clusters von Miyake, Sachiko, Kim, Sangwan, Suda, Wataru, Oshima, Kenshiro, Nakamura, Masakazu, Matsuoka, Takako, Chihara, Norio, Tomita, Atsuko, Sato, Wakiro, Kim, Seok-Won, Morita, Hidetoshi, Hattori, Masahira, Yamamura, Takashi

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Organic electrochromic timer for enzymatic skin patches von Kai, Hiroyuki, Suda, Wataru, Yoshida, Shotaro, Nishizawa, Matsuhiko

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Intrinsically Stretchable Electrochromic Display by a Composite Film of Poly(3,4-ethylenedioxythiophene) and Polyurethane von Kai, Hiroyuki, Suda, Wataru, Ogawa, Yudai, Nagamine, Kuniaki, Nishizawa, Matsuhiko

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Alterations of the gut ecological and functional microenvironment in different stages of multiple sclerosis von Takewaki, Daiki, Suda, Wataru, Sato, Wakiro, Takayasu, Lena, Kumar, Naveen, Kimura, Kimitoshi, Kaga, Naoko, Mizuno, Toshiki, Miyake, Sachiko, Hattori, Masahira, Yamamura, Takashi

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Effects of bowel preparation on the human gut microbiome and metabolome von Nagata, Naoyoshi, Tohya, Mari, Fukuda, Shinji, Suda, Wataru, Nishijima, Suguru, Takeuchi, Fumihiko, Ohsugi, Mitsuru, Tsujimoto, Tetsuro, Nakamura, Tomoka, Shimomura, Akira, Yanagisawa, Naohiro, Hisada, Yuya, Watanabe, Kazuhiro, Imbe, Koh, Akiyama, Junichi, Mizokami, Masashi, Miyoshi-Akiyama, Tohru, Uemura, Naomi, Hattori, Masahira

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A proliferative probiotic Bifidobacterium strain in the gut ameliorates progression of metabolic disorders via microbiota modulation and acetate elevation von Aoki, Ryo, Kamikado, Kohei, Suda, Wataru, Takii, Hiroshi, Mikami, Yumiko, Suganuma, Natsuki, Hattori, Masahira, Koga, Yasuhiro

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Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation von Atarashi, Koji, Suda, Wataru, Luo, Chengwei, Kawaguchi, Takaaki, Motoo, Iori, Narushima, Seiko, Kiguchi, Yuya, Yasuma, Keiko, Watanabe, Eiichiro, Tanoue, Takeshi, Thaiss, Christoph A., Sato, Mayuko, Toyooka, Kiminori, Said, Heba S., Yamagami, Hirokazu, Rice, Scott A., Gevers, Dirk, Johnson, Ryan C., Segre, Julia A., Chen, Kong, Kolls, Jay K., Elinav, Eran, Morita, Hidetoshi, Xavier, Ramnik J., Hattori, Masahira, Honda, Kenya

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Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota von Atarashi, Koji, Tanoue, Takeshi, Oshima, Kenshiro, Suda, Wataru, Nagano, Yuji, Nishikawa, Hiroyoshi, Fukuda, Shinji, Saito, Takuro, Narushima, Seiko, Hase, Koji, Kim, Sangwan, Fritz, Joëlle V., Wilmes, Paul, Ueha, Satoshi, Matsushima, Kouji, Ohno, Hiroshi, Olle, Bernat, Sakaguchi, Shimon, Taniguchi, Tadatsugu, Morita, Hidetoshi, Hattori, Masahira, Honda, Kenya

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The liver–brain–gut neural arc maintains the Treg cell niche in the gut von Teratani, Toshiaki, Mikami, Yohei, Nakamoto, Nobuhiro, Suzuki, Takahiro, Harada, Yosuke, Okabayashi, Koji, Hagihara, Yuya, Taniki, Nobuhito, Kohno, Keita, Shibata, Shinsuke, Miyamoto, Kentaro, Ishigame, Harumichi, Chu, Po-Sung, Sujino, Tomohisa, Suda, Wataru, Hattori, Masahira, Matsui, Minoru, Okada, Takaharu, Okano, Hideyuki, Inoue, Masayuki, Yada, Toshihiko, Kitagawa, Yuko, Yoshimura, Akihiko, Tanida, Mamoru, Tsuda, Makoto, Iwasaki, Yusaku, Kanai, Takanori

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Th17 Cell Induction by Adhesion of Microbes to Intestinal Epithelial Cells von Atarashi, Koji, Tanoue, Takeshi, Ando, Minoru, Kamada, Nobuhiko, Nagano, Yuji, Narushima, Seiko, Suda, Wataru, Imaoka, Akemi, Setoyama, Hiromi, Nagamori, Takashi, Ishikawa, Eiji, Shima, Tatsuichiro, Hara, Taeko, Kado, Shoichi, Jinnohara, Toshi, Ohno, Hiroshi, Kondo, Takashi, Toyooka, Kiminori, Watanabe, Eiichiro, Yokoyama, Shin-ichiro, Tokoro, Shunji, Mori, Hiroshi, Noguchi, Yurika, Morita, Hidetoshi, Ivanov, Ivaylo I., Sugiyama, Tsuyoshi, Nuñez, Gabriel, Camp, J. Gray, Hattori, Masahira, Umesaki, Yoshinori, Honda, Kenya

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Long-term persistence of gastric dysbiosis after eradication of Helicobacter pylori in patients who underwent endoscopic submucosal dissection for early gastric cancer von Watanabe, Toshio, Nadatani, Yuji, Suda, Wataru, Higashimori, Akira, Otani, Koji, Fukunaga, Shusei, Hosomi, Shuhei, Tanaka, Fumio, Nagami, Yasuaki, Taira, Koichi, Tanigawa, Tetsuya, Nakatsu, Geicho, Hattori, Masahira, Fujiwara, Yasuhiro

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Pancreatic glycoprotein 2 is a first line of defense for mucosal protection in intestinal inflammation von Kurashima, Yosuke, Kigoshi, Takaaki, Murasaki, Sayuri, Arai, Fujimi, Shimada, Kaoru, Seki, Natsumi, Kim, Yun-Gi, Hase, Koji, Ohno, Hiroshi, Kawano, Kazuya, Ashida, Hiroshi, Suzuki, Toshihiko, Morimoto, Masako, Saito, Yukari, Sasou, Ai, Goda, Yuki, Yuki, Yoshikazu, Inagaki, Yutaka, Iijima, Hideki, Suda, Wataru, Hattori, Masahira, Kiyono, Hiroshi

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Human Gut Microbiota and Its Metabolites Impact Immune Responses in COVID-19 and Its Complications von Nagata, Naoyoshi, Takeuchi, Tadashi, Masuoka, Hiroaki, Aoki, Ryo, Ishikane, Masahiro, Iwamoto, Noriko, Sugiyama, Masaya, Suda, Wataru, Nakanishi, Yumiko, Terada-Hirashima, Junko, Kimura, Moto, Nishijima, Tomohiko, Inooka, Hiroshi, Miyoshi-Akiyama, Tohru, Kojima, Yasushi, Shimokawa, Chikako, Hisaeda, Hajime, Zhang, Fen, Yeoh, Yun Kit, Ng, Siew C., Uemura, Naomi, Itoi, Takao, Mizokami, Masashi, Kawai, Takashi, Sugiyama, Haruhito, Ohmagari, Norio, Ohno, Hiroshi

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Ancient DNA analysis of food remains in human dental calculus from the Edo period, Japan von Sawafuji, Rikai, Saso, Aiko, Suda, Wataru, Hattori, Masahira, Ueda, Shintaroh

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Flavobacterium ammonificans sp. nov. and Flavobacterium ammoniigenes sp. nov., ammonifying bacteria isolated from surface river water von Watanabe, Keiji, Kitamura, Tatsumi, Ogata, Yusuke, Shindo, Chie, Suda, Wataru

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Dietary fiber induces a fat preference associated with the gut microbiota von Liow, Yi Jia, Kamimura, Itsuka, Umezaki, Masahiro, Suda, Wataru, Takayasu, Lena

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Metagenomic Identification of Microbial Signatures Predicting Pancreatic Cancer From a Multinational Study von Nagata, Naoyoshi, Nishijima, Suguru, Kojima, Yasushi, Hisada, Yuya, Imbe, Koh, Miyoshi-Akiyama, Tohru, Suda, Wataru, Kimura, Moto, Aoki, Ryo, Sekine, Katsunori, Ohsugi, Mitsuru, Miki, Kuniko, Osawa, Tsuyoshi, Ueki, Kohjiro, Oka, Shinichi, Mizokami, Masashi, Kartal, Ece, Schmidt, Thomas S.B., Molina-Montes, Esther, Estudillo, Lidia, Malats, Nuria, Trebicka, Jonel, Kersting, Stephan, Langheinrich, Melanie, Bork, Peer, Uemura, Naomi, Itoi, Takao, Kawai, Takashi

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