Spatial genomics reveals a high number and specific location of B cells in the pancreatic ductal adenocarcinoma microenvironment of long-term survivors von Aziz, Hosein M, Saida, Lawlaw, de Koning, Willem, Stubbs, Andrew P, Li, Yunlei, Sideras, Kostandinos, Palacios, Elena, Feliu, Jaime, Mendiola, Marta, van Eijck, Casper H J, Mustafa, Dana A M

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A European Spectrum of Pharmacogenomic Biomarkers: Implications for Clinical Pharmacogenomics von Mizzi, Clint, Dalabira, Eleni, Kumuthini, Judit, Dzimiri, Nduna, Balogh, Istvan, Başak, Nazli, Böhm, Ruwen, Borg, Joseph, Borgiani, Paola, Bozina, Nada, Bruckmueller, Henrike, Burzynska, Beata, Carracedo, Angel, Cascorbi, Ingolf, Deltas, Constantinos, Dolzan, Vita, Fenech, Anthony, Grech, Godfrey, Kasiulevicius, Vytautas, Kádaši, Ľudevít, Kučinskas, Vaidutis, Khusnutdinova, Elza, Loukas, Yiannis L, Macek, Jr, Milan, Makukh, Halyna, Mathijssen, Ron, Mitropoulos, Konstantinos, Mitropoulou, Christina, Novelli, Giuseppe, Papantoni, Ioanna, Pavlovic, Sonja, Saglio, Giuseppe, Setric, Jadranka, Stojiljkovic, Maja, Stubbs, Andrew P, Squassina, Alessio, Torres, Maria, Turnovec, Marek, van Schaik, Ron H, Voskarides, Konstantinos, Wakil, Salma M, Werk, Anneke, Del Zompo, Maria, Zukic, Branka, Katsila, Theodora, Lee, Ming Ta Michael, Motsinger-Rief, Alison, Mc Leod, Howard L, van der Spek, Peter J, Patrinos, George P

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The diagnostic value of nasal microbiota and clinical parameters in a multi-parametric prediction model to differentiate bacterial versus viral infections in lower respiratory trac... von Li, Yunlei, van Houten, Chantal B, Boers, Stefan A, Jansen, Ruud, Cohen, Asi, Engelhard, Dan, Kraaij, Robert, Hiltemann, Saskia D, Ju, Jie, Fernández, David, Mankoc, Cristian, González, Eva, de Waal, Wouter J, de Winter-de Groot, Karin M, Wolfs, Tom F W, Meijers, Pieter, Luijk, Bart, Oosterheert, Jan Jelrik, Sankatsing, Sanjay U C, Bossink, Aik W J, Stein, Michal, Klein, Adi, Ashkar, Jalal, Bamberger, Ellen, Srugo, Isaac, Odeh, Majed, Dotan, Yaniv, Boico, Olga, Etshtein, Liat, Paz, Meital, Navon, Roy, Friedman, Tom, Simon, Einav, Gottlieb, Tanya M, Pri-Or, Ester, Kronenfeld, Gali, Oved, Kfir, Eden, Eran, Stubbs, Andrew P, Bont, Louis J, Hays, John P

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IL-7 Receptor Mutations and Steroid Resistance in Pediatric T cell Acute Lymphoblastic Leukemia: A Genome Sequencing Study von Li, Yunlei, Buijs-Gladdines, Jessica G C A M, Canté-Barrett, Kirsten, Stubbs, Andrew P, Vroegindeweij, Eric M, Smits, Willem K, van Marion, Ronald, Dinjens, Winand N M, Horstmann, Martin, Kuiper, Roland P, Buijsman, Rogier C, Zaman, Guido J R, van der Spek, Peter J, Pieters, Rob, Meijerink, Jules P P

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Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota von Heikema, Astrid P., Horst-Kreft, Deborah, Boers, Stefan A., Jansen, Rick, Hiltemann, Saskia D., de Koning, Willem, Kraaij, Robert, de Ridder, Maria A. J., van Houten, Chantal B., Bont, Louis J., Stubbs, Andrew P., Hays, John P.

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WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates von Heikema, Astrid P., Jansen, Rick, Hiltemann, Saskia D., Hays, John P., Stubbs, Andrew P.

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A Decentralized Kidney Transplant Biopsy Classifier for Transplant Rejection Developed Using Genes of the Banff-Human Organ Transplant Panel von van Baardwijk, Myrthe, Cristoferi, Iacopo, Ju, Jie, Varol, Hilal, Minnee, Robert C, Reinders, Marlies E J, Li, Yunlei, Stubbs, Andrew P, Clahsen-van Groningen, Marian C

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Transcriptome Analysis of Infected and Bystander Type 2 Alveolar Epithelial Cells during Influenza A Virus Infection Reveals In Vivo Wnt Pathway Downregulation von Hancock, Aidan S, Stairiker, Christopher J, Boesteanu, Alina C, Monzón-Casanova, Elisa, Lukasiak, Sebastian, Mueller, Yvonne M, Stubbs, Andrew P, García-Sastre, Adolfo, Turner, Martin, Katsikis, Peter D

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An Integrated Approach for Experimental Target Identification of Hypoxia-induced miR-210 von Fasanaro, Pasquale, Greco, Simona, Lorenzi, Maria, Pescatori, Mario, Brioschi, Maura, Kulshreshtha, Ritu, Banfi, Cristina, Stubbs, Andrew, Calin, George A., Ivan, Mircea, Capogrossi, Maurizio C., Martelli, Fabio

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Identification, Validation, and Utilization of Immune Cells in Pancreatic Ductal Adenocarcinoma Based on Marker Genes von de Koning, Willem, Latifi, Diba, Li, Yunlei, van Eijck, Casper H. J., Stubbs, Andrew P., Mustafa, Dana A. M.

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FAIR data retrieval for sensitive clinical research data in Galaxy von Ouwerkerk, Jasper, Rasche, Helena, Spalding, John D, Hiltemann, Saskia, Stubbs, Andrew P

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NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy von de Koning, Willem, Miladi, Milad, Hiltemann, Saskia, Heikema, Astrid, Hays, John P, Flemming, Stephan, van den Beek, Marius, Mustafa, Dana A, Backofen, Rolf, Grüning, Björn, Stubbs, Andrew P

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Antigen Receptor Galaxy: A User-Friendly, Web-Based Tool for Analysis and Visualization of T and B Cell Receptor Repertoire Data von IJspeert, Hanna, van Schouwenburg, Pauline A, van Zessen, David, Pico-Knijnenburg, Ingrid, Stubbs, Andrew P, van der Burg, Mirjam

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Evaluation of the Antigen-Experienced B-Cell Receptor Repertoire in Healthy Children and Adults von IJspeert, Hanna, van Schouwenburg, Pauline A, van Zessen, David, Pico-Knijnenburg, Ingrid, Driessen, Gertjan J, Stubbs, Andrew P, van der Burg, Mirjam

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Deciphering imprints of impaired memory B-cell maturation in germinal centers of three patients with common variable immunodeficiency von van Schouwenburg, Pauline, Unger, Susanne, Payne, Kathryn J., Kaiser, Fabian M. P., Pico-Knijnenburg, Ingrid, Pfeiffer, Jens, Hausmann, Oliver, Friedmann, David, Erbel, Michelle, Seidl, Maximilian, van Zessen, David, Stubbs, Andrew P., van der Burg, Mirjam, Warnatz, Klaus

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Multiomic profiling of transplant glomerulopathy reveals a novel T-cell dominant subclass von Cristoferi, Iacopo, Varol, Hilal, van Baardwijk, Myrthe, Rahiem, Layla, Lila, Karishma A., van den Bosch, Thierry P.P., Baan, Carla C., Hesselink, Dennis A., Kramann, Rafael, Minnee, Robert C., Mustafa, Dana A.M., Reinders, Marlies E.J., Roelen, Dave L., Shahzad-Arshad, Shazia P., Smith, Rex N., Stubbs, Andrew P., Colvin, Robert B., Rosales, Ivy A., Clahsen-van Groningen, Marian C.

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Similar recombination-activating gene ( RAG ) mutations result in similar immunobiological effects but in different clinical phenotypes von IJspeert, Hanna, MSc, Driessen, Gertjan J., MD, PhD, Moorhouse, Michael J., PhD, Hartwig, Nico G., MD, PhD, Wolska-Kusnierz, Beata, MD, Kalwak, Krzysztof, MD, Pituch-Noworolska, Anna, MD, Kondratenko, Irina, MD, van Montfrans, Joris M., MD, PhD, Mejstrikova, Ester, MD, Lankester, Arjan C., MD, PhD, Langerak, Anton W., PhD, van Gent, Dik C., PhD, Stubbs, Andrew P., PhD, van Dongen, Jacques J.M., MD, PhD, van der Burg, Mirjam, PhD

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Prediction of molecular subclasses of uveal melanoma by deep learning using routine haematoxylin–eosin‐stained tissue slides von Akram, Farhan, Bruyn, Daniël P, Bosch, Quincy C C, Trandafir, Teodora E, Bosch, Thierry P P, Verdijk, Rob M, Klein, Annelies, Kiliç, Emine, Stubbs, Andrew P, Brosens, Erwin, Thüsen, Jan H

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Antigen receptor sequencing of paired bone marrow samples shows homogeneous distribution of acute lymphoblastic leukemia subclones von Theunissen, Prisca M J, van Zessen, David, Stubbs, Andrew P, Faham, Malek, Zwaan, Christian M, van Dongen, Jacques J M, Van Der Velden, Vincent H J

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Development and evaluation of a culture-free microbiota profiling platform (MYcrobiota) for clinical diagnostics von Boers, Stefan A., Hiltemann, Saskia D., Stubbs, Andrew P., Jansen, Ruud, Hays, John P.

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