Core Genome Multilocus Sequence Typing for Identification of Globally Distributed Clonal Groups and Differentiation of Outbreak Strains of Listeria monocytogenes von Chen, Yi, Gonzalez-Escalona, Narjol, Hammack, Thomas S, Allard, Marc W, Strain, Errol A, Brown, Eric W

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Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States von Chen, Yi, Luo, Yan, Curry, Phillip, Timme, Ruth, Melka, David, Doyle, Matthew, Parish, Mickey, Hammack, Thomas S, Allard, Marc W, Brown, Eric W, Strain, Errol A

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Genomic analysis of azithromycin-resistant Salmonella from food animals at slaughter and processing, and retail meats, 2011-2021, United States von Ge, Beilei, Mukherjee, Sampa, Li, Cong, Harrison, Lucas B, Hsu, Chih-Hao, Tran, Thu-Thuy, Whichard, Jean M, Dessai, Uday, Singh, Ruby, Gilbert, Jeffrey M, Strain, Errol A, McDermott, Patrick F, Zhao, Shaohua

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Comparative evaluation of direct plating and most probable number for enumeration of low levels of Listeria monocytogenes in naturally contaminated ice cream products von Chen, Yi, Pouillot, Régis, S. Burall, Laurel, Strain, Errol A., Van Doren, Jane M., De Jesus, Antonio J., Laasri, Anna, Wang, Hua, Ali, Laila, Tatavarthy, Aparna, Zhang, Guodong, Hu, Lijun, Day, James, Sheth, Ishani, Kang, Jihun, Sahu, Surasri, Srinivasan, Devayani, Brown, Eric W., Parish, Mickey, Zink, Donald L., Datta, Atin R., Hammack, Thomas S., Macarisin, Dumitru

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Vibrio caribbeanicus sp. nov., isolated from the marine sponge Scleritoderma cyanea von Hoffmann, Maria, Monday, Steven R, Allard, Marc W, Strain, Errol A, Whittaker, Paul, Naum, Marianna, McCarthy, Peter J, Lopez, Jose V, Fischer, Markus, Brown, Eric W

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A one health approach for monitoring antimicrobial resistance: developing a national freshwater pilot effort von Franklin, Alison M, Weller, Daniel L, Durso, Lisa M, Bagley, Mark, Davis, Benjamin C, Frye, Jonathan G, Grim, Christopher J, Ibekwe, Abasiofiok M, Jahne, Michael A, Keely, Scott P, Kraft, Autumn L, McConn, Betty R, Mitchell, Richard M, Ottesen, Andrea R, Sharma, Manan, Strain, Errol A, Tadesse, Daniel A, Tate, Heather, Wells, Jim E, Williams, Clinton F, Cook, Kim L, Kabera, Claudine, McDermott, Patrick F, Garland, Jay L

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Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States von Hoffmann, Maria, Luo, Yan, Monday, Steven R., Gonzalez-Escalona, Narjol, Ottesen, Andrea R., Muruvanda, Tim, Wang, Charles, Kastanis, George, Keys, Christine, Janies, Daniel, Senturk, Izzet F., Catalyurek, Umit V., Wang, Hua, Hammack, Thomas S., Wolfgang, William J., Schoonmaker-Bopp, Dianna, Chu, Alvina, Myers, Robert, Haendiges, Julie, Evans, Peter S., Meng, Jianghong, Strain, Errol A., Allard, Marc W., Brown, Eric W.

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The spread of pESI-mediated extended-spectrum cephalosporin resistance in Salmonella serovars-Infantis, Senftenberg, and Alachua isolated from food animal sources in the United Sta... von Li, Cong, Tate, Heather, Huang, Xinyang, Hsu, Chih-Hao, Harrison, Lucas B, Zhao, Shaohua, Fortenberry, Gamola Z, Dessai, Uday, McDermott, Patrick F, Strain, Errol A

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Listeria monocytogenes in Stone Fruits Linked to a Multistate Outbreak: Enumeration of Cells and Whole-Genome Sequencing von Chen, Yi, Burall, Laurel S, Luo, Yan, Timme, Ruth, Melka, David, Muruvanda, Tim, Payne, Justin, Wang, Charles, Kastanis, George, Maounounen-Laasri, Anna, De Jesus, Antonio J, Curry, Phillip E, Stones, Robert, K'Aluoch, Okumu, Liu, Eileen, Salter, Monique, Hammack, Thomas S, Evans, Peter S, Parish, Mickey, Allard, Marc W, Datta, Atin, Strain, Errol A, Brown, Eric W

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Whole Genome and Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analyses of Listeria monocytogenes Isolates Associated with an Outbreak Linked to Cheese,... von Chen, Yi, Luo, Yan, Carleton, Heather, Timme, Ruth, Melka, David, Muruvanda, Tim, Wang, Charles, Kastanis, George, Katz, Lee S, Turner, Lauren, Fritzinger, Angela, Moore, Terence, Stones, Robert, Blankenship, Joseph, Salter, Monique, Parish, Mickey, Hammack, Thomas S, Evans, Peter S, Tarr, Cheryl L, Allard, Marc W, Strain, Errol A, Brown, Eric W

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Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and L... von Chen, Yi, Luo, Yan, Pettengill, James, Timme, Ruth, Melka, David, Doyle, Matthew, Jackson, Alikeh, Parish, Mickey, Hammack, Thomas S, Allard, Marc W, Brown, Eric W, Strain, Errol A

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Toward the Adoption of Loop-Mediated Isothermal Amplification for Salmonella Screening at the National Antimicrobial Resistance Monitoring System's Retail Meat Sites von Young, Shenia R, Domesle, Kelly J, McDonald, Ryan C, Lozinak, Kristen A, Laksanalamai, Pongpan, Harrell, Erin, Thakur, Siddhartha, Kabera, Claudine, Strain, Errol A, McDermott, Patrick F, Ge, Beilei

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Efficient Isolation and Identification of Bacillus cereus Group von TALLENT, Sandra M, KOTEWICZ, Kristin M, STRAIN, Errol A, BENNETT, Reginald W

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Microbiota of the Hickey Run Tributary of the Anacostia River von Cagle, Robin, Ramachandran, Padmini, Reed, Elizabeth, Commichaux, Seth, Mammel, Mark K, Lacher, David W, Miller, Daniela, Lindley, Sabina, Pop, Mihai, Bazaco, Michael C, Wolpert, Beverly, Strain, Errol A, Aker, Scott, Feely, Joan, Ottesen, Andrea

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Survival of Salmonella Typhi and Shigella dysenteriae in Dehydrated Infant Formula von Day, James B., Sharma, Devang, Siddique, Nusrat, Hao, Yun-Yun D., Strain, Errol A., Blodgett, Robert J., Al-Khaldi, Sufian F.

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Analysis of High-Throughput Flow Cytometry Data Using plateCore von Strain, Errol, Hahne, Florian, Brinkman, Ryan R., Haaland, Perry

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flowCore: a Bioconductor package for high throughput flow cytometry von Hahne, Florian, LeMeur, Nolwenn, Brinkman, Ryan R, Ellis, Byron, Haaland, Perry, Sarkar, Deepayan, Spidlen, Josef, Strain, Errol, Gentleman, Robert

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Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations von Pightling, Arthur W, Pettengill, James B, Luo, Yan, Baugher, Joseph D, Rand, Hugh, Strain, Errol

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Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database von Allard, Marc W, Strain, Errol, Melka, David, Bunning, Kelly, Musser, Steven M, Brown, Eric W, Timme, Ruth

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GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians von Gangiredla, Jayanthi, Rand, Hugh, Benisatto, Daniel, Payne, Justin, Strittmatter, Charles, Sanders, Jimmy, Wolfgang, William J, Libuit, Kevin, Herrick, James B, Prarat, Melanie, Toro, Magaly, Farrell, Thomas, Strain, Errol

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