A Plausible Model for the Digital Response of p53 to DNA Damage von Ma, Lan, Wagner, John, Rice, John Jeremy, Hu, Wenwei, Levine, Arnold J., Stolovitzky, Gustavo A., Austin, Robert H.

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Boolean network model predicts cell cycle sequence of fission yeast von Davidich, Maria I, Bornholdt, Stefan

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From beat tracking to beat expectation: Cognitive-based beat tracking for capturing pulse clarity through time von Miguel, Martin Alejandro, Sigman, Mariano, Fernandez Slezak, Diego

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Formation of Regulatory Patterns During Signal Propagation in a Mammalian Cellular Network von Ma'ayan, Avi, Jenkins, Sherry L, Neves, Susana, Hasseldine, Anthony, Grace, Elizabeth, Dubin-Thaler, Benjamin, Eungdamrong, Narat J, Weng, Gehzi, Ram, Prahlad T, Rice, J. Jeremy, Kershenbaum, Aaron, Stolovitzky, Gustavo A, Blitzer, Robert D, Iyengar, Ravi

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Transcriptional Analysis of the B Cell Germinal Center Reaction von Klein, Ulf, Tu, Yuhai, Stolovitzky, Gustavo A., Keller, Jeffrey L., Haddad, Joseph, Miljkovic, Vladan, Cattoretti, Giorgio, Califano, Andrea, Dalla-Favera, Riccardo

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Accurate and reliable cancer classification based on probabilistic inference of pathway activity von Su, Junjie, Yoon, Byung-Jun, Dougherty, Edward R

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Dynamics of collective performance in collaboration networks von Amelkin, Victor, Askarisichani, Omid, Kim, Young Ji, Malone, Thomas W, Singh, Ambuj K

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Tracking CD40 signaling during germinal center development von Basso, Katia, Klein, Ulf, Niu, Huifeng, Stolovitzky, Gustavo A., Tu, Yuhai, Califano, Andrea, Cattoretti, Giorgio, Dalla-Favera, Riccardo

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Faithfulness-boost effect: Loyal teammate selection correlates with skill acquisition improvement in online games von Landfried, Gustavo, Fernández Slezak, Diego, Mocskos, Esteban

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Sustained Oscillations of NF-κB Produce Distinct Genome Scanning and Gene Expression Profiles von Sung, Myong-Hee, Salvatore, Luigi, De Lorenzi, Rossana, Indrawan, Anindya, Pasparakis, Manolis, Hager, Gordon L., Bianchi, Marco E., Agresti, Alessandra

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Quantitative modeling of the terminal differentiation of B cells and mechanisms of lymphomagenesis von Martínez, María Rodríguez, Corradin, Alberto, Klein, Ulf, Álvarez, Mariano Javier, Toffolo, Gianna M, di Camillo, Barbara, Califano, Andrea, Stolovitzky, Gustavo A

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Optimal signal processing in small stochastic biochemical networks von Ziv, Etay, Nemenman, Ilya, Wiggins, Chris H

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Extended kalman filter for estimation of parameters in nonlinear state-space models of biochemical networks von Sun, Xiaodian, Jin, Li, Xiong, Momiao

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Simulation studies as designed experiments: the comparison of penalized regression models in the "large p, small n" setting von Chaibub Neto, Elias, Bare, J Christopher, Margolin, Adam A

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Bio-inspired silicon nanospikes fabricated by metal-assisted chemical etching for antibacterial surfaces von Hu, Huan, Siu, Vince S., Gifford, Stacey M., Kim, Sungcheol, Lu, Minhua, Meyer, Pablo, Stolovitzky, Gustavo A.

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COSIFER: a Python package for the consensus inference of molecular interaction networks von Manica, Matteo, Bunne, Charlotte, Mathis, Roland, Cadow, Joris, Ahsen, Mehmet Eren, Stolovitzky, Gustavo A, Martínez, María Rodríguez

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Constraint-based modeling and kinetic analysis of the Smad dependent TGF-beta signaling pathway von Zi, Zhike, Klipp, Edda

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R/PY-SUMMA: An R/Python Package for Unsupervised Ensemble Learning for Binary Classification Problems in Bioinformatics von Ahsen, Mehmet Eren, Vogel, Robert, Stolovitzky, Gustavo A

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How to turn a genetic circuit into a synthetic tunable oscillator, or a bistable switch von Marucci, Lucia, Barton, David A W, Cantone, Irene, Ricci, Maria Aurelia, Cosma, Maria Pia, Santini, Stefania, di Bernardo, Diego, di Bernardo, Mario

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Reassortment Patterns in Swine Influenza Viruses von Khiabanian, Hossein, Trifonov, Vladimir, Rabadan, Raul

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