Topology-function conservation in protein-protein interaction networks von Davis, Darren, Yaveroğlu, Ömer Nebil, Malod-Dognin, Noël, Stojmirovic, Aleksandar, Pržulj, Nataša

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A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients von Peters, Lauren A., Friedman, Joshua R., Stojmirovic, Aleksandar, Hagen, Jacob, Houten, Sander, Dodatko, Tetyana, Amaro, Mariana P., Restrepo, Paula, Chai, Zhi, Rodrigo Mora, J., Raymond, Holly A., Curran, Mark, Dobrin, Radu, Das, Anuk, Xiong, Huabao, Schadt, Eric E., Argmann, Carmen, Losic, Bojan

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Abnormal Small Intestinal Epithelial Microvilli in Patients With Crohn's Disease von VanDussen, Kelli L., Stojmirović, Aleksandar, Li, Katherine, Liu, Ta-Chiang, Kimes, Patrick K., Muegge, Brian D., Simpson, Katherine F., Ciorba, Matthew A., Perrigoue, Jacqueline G., Friedman, Joshua R., Towne, Jennifer E., Head, Richard D., Stappenbeck, Thaddeus S.

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Su1830 HIGH PERFORMANCE ESTIMATION OF GEBOES SCORE IN ULCERATIVE COLITIS USING MULTI-INSTANCE LEARNING AND FOUNDATIONAL MODELS von Givon, Lev, Parmar, Chaitanya, Cula, Gabriela O., Schultz, Weiwei, Branigan, Patrick, Stojmirovic, Aleksandar, Ghanem, Louis R., Standish, Kristopher

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Revealing the Hidden Language of Complex Networks von Yaveroğlu, Ömer Nebil, Malod-Dognin, Noël, Davis, Darren, Levnajic, Zoran, Janjic, Vuk, Karapandza, Rasa, Stojmirovic, Aleksandar, Pržulj, Nataša

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Using Computer Vision to Improve Endoscopic Disease Quantification in Therapeutic Clinical Trials of Ulcerative Colitis von Stidham, Ryan W., Cai, Lingrui, Cheng, Shuyang, Rajaei, Flora, Hiatt, Tadd, Wittrup, Emily, Rice, Michael D., Bishu, Shrinivas, Wehkamp, Jan, Schultz, Weiwei, Khan, Najat, Stojmirovic, Aleksandar, Ghanem, Louis R., Najarian, Kayvan

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Su1831 IDENTIFICATION AND RANKING OF GENE MODULE ASSOCIATION WITH HISTOLOGIC FEATURES IN ULCERATIVE COLITIS von Givon, Lev, Parmar, Chaitanya, Cula, Gabriela O., Schultz, Weiwei, Branigan, Patrick, Stojmirovic, Aleksandar, Ghanem, Louis R., Richards, Dylan, Freeman, Tom C., Standish, Kristopher

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Ulcerative colitis is characterized by a plasmablast-skewed humoral response associated with disease activity von Uzzan, Mathieu, Martin, Jerome C., Mesin, Luka, Livanos, Alexandra E., Castro-Dopico, Tomas, Huang, Ruiqi, Petralia, Francesca, Magri, Giuliana, Kumar, Shashi, Zhao, Qing, Rosenstein, Adam K., Tokuyama, Minami, Sharma, Keshav, Ungaro, Ryan, Kosoy, Roman, Jha, Divya, Fischer, Jeremy, Singh, Harpriya, Keir, Mary E., Ramamoorthi, Nandhini, O’Gorman, William E., Cohen, Benjamin L., Rahman, Adeeb, Cossarini, Francesca, Seki, Akihiro, Leyre, Louise, Vaquero, Sonia Tejedor, Gurunathan, Sakteesh, Grasset, Emilie K., Losic, Bojan, Dubinsky, Marla, Greenstein, Alexander J., Gottlieb, Zoe, Legnani, Peter, George, James, Irizar, Haritz, Stojmirovic, Aleksandar, Brodmerkel, Carrie, Kasarkis, Andrew, Sands, Bruce E., Furtado, Glaucia, Lira, Sergio A., Tuong, Zewen K., Ko, Huaibin M., Cerutti, Andrea, Elson, Charles O., Clatworthy, Menna R., Merad, Miriam, Suárez-Fariñas, Mayte, Argmann, Carmen, Hackney, Jason A., Victora, Gabriel D., Randolph, Gwendalyn J., Kenigsberg, Ephraim, Colombel, Jean Frederic, Mehandru, Saurabh

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A functional genomics predictive network model identifies regulators of inflammatory bowel disease von Peters, Lauren A, Perrigoue, Jacqueline, Mortha, Arthur, Iuga, Alina, Song, Won-min, Neiman, Eric M, Llewellyn, Sean R, Di Narzo, Antonio, Kidd, Brian A, Telesco, Shannon E, Zhao, Yongzhong, Stojmirovic, Aleksandar, Sendecki, Jocelyn, Shameer, Khader, Miotto, Riccardo, Losic, Bojan, Shah, Hardik, Lee, Eunjee, Wang, Minghui, Faith, Jeremiah J, Kasarskis, Andrew, Brodmerkel, Carrie, Curran, Mark, Das, Anuk, Friedman, Joshua R, Fukui, Yoshinori, Humphrey, Mary Beth, Iritani, Brian M, Sibinga, Nicholas, Tarrant, Teresa K, Argmann, Carmen, Hao, Ke, Roussos, Panos, Zhu, Jun, Zhang, Bin, Dobrin, Radu, Mayer, Lloyd F, Schadt, Eric E

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Building a hierarchical organization of protein complexes out of protein association data von Stojmirović, Aleksandar, Yu, Yi-Kuo

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Intestinal Inflammation Modulates the Expression of ACE2 and TMPRSS2 and Potentially Overlaps With the Pathogenesis of SARS-CoV-2–related Disease von Suárez-Fariñas, Mayte, Tokuyama, Minami, Wei, Gabrielle, Huang, Ruiqi, Livanos, Alexandra, Jha, Divya, Levescot, Anais, Irizar, Haritz, Kosoy, Roman, Cording, Sascha, Wang, Wenhui, Losic, Bojan, Ungaro, Ryan C., Di’Narzo, Antonio, Martinez-Delgado, Gustavo, Suprun, Maria, Corley, Michael J., Stojmirovic, Aleksandar, Houten, Sander M., Peters, Lauren, Curran, Mark, Brodmerkel, Carrie, Perrigoue, Jacqueline, Friedman, Joshua R., Hao, Ke, Schadt, Eric E., Zhu, Jun, Ko, Huaibin M., Cho, Judy, Dubinsky, Marla C., Sands, Bruce E., Ndhlovu, Lishomwa, Cerf-Bensusan, Nadine, Kasarskis, Andrew, Colombel, Jean-Frederic, Harpaz, Noam, Argmann, Carmen, Mehandru, Saurabh

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Robust and accurate data enrichment statistics via distribution function of sum of weights von Stojmirović, Aleksandar, Yu, Yi-Kuo

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Integrative Analysis of the Inflammatory Bowel Disease Serum Metabolome Improves Our Understanding of Genetic Etiology and Points to Novel Putative Therapeutic Targets von Di'Narzo, Antonio F., Houten, Sander M., Kosoy, Roman, Huang, Ruiqi, Vaz, Frédéric M., Hou, Ruixue, Wei, Gabrielle, Wang, Wenhui, Comella, Phillip H., Dodatko, Tetyana, Rogatsky, Eduard, Stojmirovic, Aleksandar, Brodmerkel, Carrie, Perrigoue, Jacqueline, Hart, Amy, Curran, Mark, Friedman, Joshua R., Zhu, Jun, Agrawal, Manasi, Cho, Judy, Ungaro, Ryan, Dubinsky, Marla C., Sands, Bruce E., Suárez-Fariñas, Mayte, Schadt, Eric E., Colombel, Jean-Frédéric, Kasarskis, Andrew, Hao, Ke, Argmann, Carmen

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Biopsy and blood-based molecular biomarker of inflammation in IBD von Argmann, Carmen, Hou, Ruixue, Ungaro, Ryan C, Irizar, Haritz, Al-Taie, Zainab, Huang, Ruiqi, Kosoy, Roman, Venkat, Swati, Song, Won-Min, Di'Narzo, Antonio F, Losic, Bojan, Hao, Ke, Peters, Lauren, Comella, Phillip H, Wei, Gabrielle, Atreja, Ashish, Mahajan, Milind, Iuga, Alina, Desai, Prerak T, Branigan, Patrick, Stojmirovic, Aleksandar, Perrigoue, Jacqueline, Brodmerkel, Carrie, Curran, Mark, Friedman, Joshua R, Hart, Amy, Lamousé-Smith, Esi, Wehkamp, Jan, Mehandru, Saurabh, Schadt, Eric E, Sands, Bruce E, Dubinsky, Marla C, Colombel, Jean-Frederic, Kasarskis, Andrew, Suárez-Fariñas, Mayte

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Log-odds sequence logos von Yu, Yi-Kuo, Capra, John A, Stojmirović, Aleksandar, Landsman, David, Altschul, Stephen F

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NDEx, the Network Data Exchange von Pratt, Dexter, Chen, Jing, Welker, David, Rivas, Ricardo, Pillich, Rudolf, Rynkov, Vladimir, Ono, Keiichiro, Miello, Carol, Hicks, Lyndon, Szalma, Sandor, Stojmirovic, Aleksandar, Dobrin, Radu, Braxenthaler, Michael, Kuentzer, Jan, Demchak, Barry, Ideker, Trey

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796: COMPUTER VISION MEASUREMENT OF DISEASE SEVERITY DISTRIBUTION OUTPERFORMS TRADITIONAL ENDOSCOPIC SCORING FOR DETECTING THERAPEUTIC RESPONSE IN A CLINICAL TRIAL OF USTEKINUMAB F... von Stidham, Ryan, Yao, Heming, Soroushmehr, Reza, Gryak, Jonathan, Hiatt, Tadd, Rice, Michael D., Bishu, Shrinivas, Ghanem, Louis R., Stojmirovic, Aleksandar, Wehkamp, Jan, Wu, Xiaoying, Khan, Najat, Najarian, Kayvan

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Mo1504: IN SILICO EVALUATION AND PRE-CLINICAL EFFICACY OF ANTI-TNF AND ANTI-IL-23 COMBINATION THERAPY IN INFLAMMATORY BOWEL DISEASE von Perrigoue, Jacqueline, Muniz-Bongers, Luciana R., Ong, Luvena L., Chen, Yanqing, Chang, Leon, Ngo, Karen, Stojmirovic, Aleksandar, O’Brien, Christopher D., Germinaro, Matthew, Rao, Rajesh, Vetter, Marion, Towne, Jennifer

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Information flow in interaction networks II: channels, path lengths, and potentials von Stojmirović, Aleksandar, Yu, Yi-Kuo

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Mo1736 PREDICTING REMISSION EARLY IN ULCERATIVE COLITIS CLINICAL TRIALS USING COMPUTER VISION ANALYSIS OF ENDOSCOPIC VIDEO von Stidham, Ryan, Minoccheri, Cristian, Tesic, Sophia, Cai, Lingrui, Cheng, Shuyang, Rajaei, Flora, Hiatt, Tadd, Rice, Michael D., Bishu, Shrinivas, Wehkamp, Jan, Khan, Najat, Mansi, Tommaso, Wu, Xiaoying, Schultz, Weiwei, Stojmirovic, Aleksandar, Ghanem, Louis R., Najarian, Kayvan

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