Single-cell sequencing-based technologies will revolutionize whole-organism science von Shapiro, Ehud, Biezuner, Tamir, Linnarsson, Sten

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The promise of spatial transcriptomics for neuroscience in the era of molecular cell typing von Lein, Ed, Borm, Lars E., Linnarsson, Sten

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Origin, fate and dynamics of macrophages at central nervous system interfaces von Goldmann, Tobias, Wieghofer, Peter, Jordão, Marta Joana Costa, Prutek, Fabiola, Hagemeyer, Nora, Frenzel, Kathrin, Amann, Lukas, Staszewski, Ori, Kierdorf, Katrin, Krueger, Martin, Locatelli, Giuseppe, Hochgerner, Hannah, Zeiser, Robert, Epelman, Slava, Geissmann, Frederic, Priller, Josef, Rossi, Fabio M V, Bechmann, Ingo, Kerschensteiner, Martin, Linnarsson, Sten, Jung, Steffen, Prinz, Marco

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Spatial organization of the somatosensory cortex revealed by osmFISH von Codeluppi, Simone, Borm, Lars E., Zeisel, Amit, La Manno, Gioele, van Lunteren, Josina A., Svensson, Camilla I., Linnarsson, Sten

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Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos von Petropoulos, Sophie, Edsgärd, Daniel, Reinius, Björn, Deng, Qiaolin, Panula, Sarita Pauliina, Codeluppi, Simone, Plaza Reyes, Alvaro, Linnarsson, Sten, Sandberg, Rickard, Lanner, Fredrik

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Single-cell mRNA isoform diversity in the mouse brain von Karlsson, Kasper, Linnarsson, Sten

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Remodeling of secretory lysosomes during education tunes functional potential in NK cells von Goodridge, Jodie P., Jacobs, Benedikt, Saetersmoen, Michelle L., Clement, Dennis, Hammer, Quirin, Clancy, Trevor, Skarpen, Ellen, Brech, Andreas, Landskron, Johannes, Grimm, Christian, Pfefferle, Aline, Meza-Zepeda, Leonardo, Lorenz, Susanne, Wiiger, Merete Thune, Louch, William E., Ask, Eivind Heggernes, Liu, Lisa L., Oei, Vincent Yi Sheng, Kjällquist, Una, Linnarsson, Sten, Patel, Sandip, Taskén, Kjetil, Stenmark, Harald, Malmberg, Karl-Johan

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Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing von Usoskin, Dmitry, Furlan, Alessandro, Islam, Saiful, Abdo, Hind, Lönnerberg, Peter, Lou, Daohua, Hjerling-Leffler, Jens, Haeggström, Jesper, Kharchenko, Olga, Kharchenko, Peter V, Linnarsson, Sten, Ernfors, Patrik

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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics von Ståhl, Patrik L., Salmén, Fredrik, Vickovic, Sanja, Lundmark, Anna, Navarro, José Fernández, Magnusson, Jens, Giacomello, Stefania, Asp, Michaela, Westholm, Jakub O., Huss, Mikael, Mollbrink, Annelie, Linnarsson, Sten, Codeluppi, Simone, Borg, Åke, Pontén, Fredrik, Costea, Paul Igor, Sahlén, Pelin, Mulder, Jan, Bergmann, Olaf, Lundeberg, Joakim, Frisén, Jonas

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Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types von Häring, Martin, Zeisel, Amit, Hochgerner, Hannah, Rinwa, Puneet, Jakobsson, Jon E. T., Lönnerberg, Peter, La Manno, Gioele, Sharma, Nilesh, Borgius, Lotta, Kiehn, Ole, Lagerström, Malin C., Linnarsson, Sten, Ernfors, Patrik

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Counting absolute numbers of molecules using unique molecular identifiers von Kivioja, Teemu, Vähärautio, Anna, Karlsson, Kasper, Bonke, Martin, Enge, Martin, Linnarsson, Sten, Taipale, Jussi

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Highly multiplexed and strand-specific single-cell RNA 5′ end sequencing von Islam, Saiful, Kjällquist, Una, Moliner, Annalena, Zajac, Pawel, Fan, Jian-Bing, Lönnerberg, Peter, Linnarsson, Sten

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Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells von La Manno, Gioele, Gyllborg, Daniel, Codeluppi, Simone, Nishimura, Kaneyasu, Salto, Carmen, Zeisel, Amit, Borm, Lars E., Stott, Simon R.W., Toledo, Enrique M., Villaescusa, J. Carlos, Lönnerberg, Peter, Ryge, Jesper, Barker, Roger A., Arenas, Ernest, Linnarsson, Sten

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Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq von Zeisel, Amit, Muñoz-Manchado, Ana B., Codeluppi, Simone, Lönnerberg, Peter, La Manno, Gioele, Juréus, Anna, Marques, Sueli, Munguba, Hermany, He, Liqun, Betsholtz, Christer, Rolny, Charlotte, Castelo-Branco, Gonçalo, Hjerling-Leffler, Jens, Linnarsson, Sten

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Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq von Islam, Saiful, Kjällquist, Una, Moliner, Annalena, Zajac, Pawel, Fan, Jian-Bing, Lönnerberg, Peter, Linnarsson, Sten

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High-throughput chromatin accessibility profiling at single-cell resolution von Mezger, Anja, Klemm, Sandy, Mann, Ishminder, Brower, Kara, Mir, Alain, Bostick, Magnolia, Farmer, Andrew, Fordyce, Polly, Linnarsson, Sten, Greenleaf, William

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Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics von Harris, Kenneth D, Hochgerner, Hannah, Skene, Nathan G, Magno, Lorenza, Katona, Linda, Bengtsson Gonzales, Carolina, Somogyi, Peter, Kessaris, Nicoletta, Linnarsson, Sten, Hjerling-Leffler, Jens

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Genetic identification of brain cell types underlying schizophrenia von Skene, Nathan G., Bryois, Julien, Bakken, Trygve E., Breen, Gerome, Crowley, James J., Gaspar, Héléna A., Giusti-Rodriguez, Paola, Hodge, Rebecca D., Miller, Jeremy A., Muñoz-Manchado, Ana B., O’Donovan, Michael C., Owen, Michael J., Pardiñas, Antonio F., Ryge, Jesper, Walters, James T. R., Linnarsson, Sten, Lein, Ed S., Sullivan, Patrick F., Hjerling-Leffler, Jens

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Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system von Marques, Sueli, Zeisel, Amit, Codeluppi, Simone, van Bruggen, David, Falcão, Ana Mendanha, Xiao, Lin, Li, Huiliang, Häring, Martin, Hochgerner, Hannah, Romanov, Roman A., Gyllborg, Daniel, Muñoz-Manchado, Ana B., La Manno, Gioele, Lönnerberg, Peter, Floriddia, Elisa M., Rezayee, Fatemah, Ernfors, Patrik, Arenas, Ernest, Hjerling-Leffler, Jens, Harkany, Tibor, Richardson, William D., Linnarsson, Sten, Castelo-Branco, Gonçalo

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A comparative strategy for single-nucleus and single-cell transcriptomes confirms accuracy in predicted cell-type expression from nuclear RNA von Lake, Blue B., Codeluppi, Simone, Yung, Yun C., Gao, Derek, Chun, Jerold, Kharchenko, Peter V., Linnarsson, Sten, Zhang, Kun

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