Transcription Factor AP1 Potentiates Chromatin Accessibility and Glucocorticoid Receptor Binding von Biddie, Simon C., John, Sam, Sabo, Pete J., Thurman, Robert E., Johnson, Thomas A., Schiltz, R. Louis, Miranda, Tina B., Sung, Myong-Hee, Trump, Saskia, Lightman, Stafford L., Vinson, Charles, Stamatoyannopoulos, John A., Hager, Gordon L.

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Dynamic Exchange at Regulatory Elements during Chromatin Remodeling Underlies Assisted Loading Mechanism von Voss, Ty C., Schiltz, R. Louis, Sung, Myong-Hee, Yen, Paul M., Stamatoyannopoulos, John A., Biddie, Simon C., Johnson, Thomas A., Miranda, Tina B., John, Sam, Hager, Gordon L.

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Chromatin accessibility pre-determines glucocorticoid receptor binding patterns von Hager, Gordon L, Stamatoyannopoulos, John A, John, Sam, Sabo, Peter J, Thurman, Robert E, Sung, Myong-Hee, Biddie, Simon C, Johnson, Thomas A

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Maritime route of colonization of Europe von Paschou, Peristera, Drineas, Petros, Yannaki, Evangelia, Razou, Anna, Kanaki, Katerina, Tsetsos, Fotis, Padmanabhuni, Shanmukha Sampath, Michalodimitrakis, Manolis, Renda, Maria C., Pavlovic, Sonja, Anagnostopoulos, Achilles, Stamatoyannopoulos, John A., Kidd, Kenneth K., Stamatoyannopoulos, George

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Topologically associating domains are stable units of replication-timing regulation von Pope, Benjamin D., Ryba, Tyrone, Dileep, Vishnu, Yue, Feng, Wu, Weisheng, Denas, Olgert, Vera, Daniel L., Wang, Yanli, Hansen, R. Scott, Canfield, Theresa K., Thurman, Robert E., Cheng, Yong, Gülsoy, Günhan, Dennis, Jonathan H., Snyder, Michael P., Stamatoyannopoulos, John A., Taylor, James, Hardison, Ross C., Kahveci, Tamer, Ren, Bing, Gilbert, David M.

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Guidelines for investigating causality of sequence variants in human disease von MacArthur, D. G., Manolio, T. A., Dimmock, D. P., Rehm, H. L., Shendure, J., Abecasis, G. R., Adams, D. R., Altman, R. B., Antonarakis, S. E., Ashley, E. A., Barrett, J. C., Biesecker, L. G., Conrad, D. F., Cooper, G. M., Cox, N. J., Daly, M. J., Gerstein, M. B., Goldstein, D. B., Hirschhorn, J. N., Leal, S. M., Pennacchio, L. A., Stamatoyannopoulos, J. A., Sunyaev, S. R., Valle, D., Voight, B. F., Winckler, W., Gunter, C.

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Defining functional DNA elements in the human genome von Kellis, Manolis, Wold, Barbara, Snyderd, Michael P., Bernstein, Bradley E., Kundaje, Anshul, Marinov, Georgi K., Ward, Lucas D., Birney, Ewan, Crawford, Gregory E., Dekker, Job, Dunham, Ian, Elnitski, Laura L., Farnham, Peggy J., Feingold, Elise A., Gerstein, Mark, Giddings, Morgan C., Gilbert, David M., Gingeras, Thomas R., Green, Eric D., Guigo, Roderic, Hubbard, Tim, Kent, Jim, Lieb, Jason D., Myerst, Richard M., Pazin, Michael J., Ren, Bing, Stamatoyannopoulos, John A., Weng, Zhiping, White, Kevin P., Hardison, Ross C.

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BRIEF REPORT: Absence of Hemoglobin A in a Double Heterozygote for F-Thalassemia and Hemoglobin S von STAMATOYANNOPOULOS, C., SOFRONIADOU, C., AKRIVAKIS, A.

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Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions von Sheffield, Nathan C, Thurman, Robert E, Song, Lingyun, Safi, Alexias, Stamatoyannopoulos, John A, Lenhard, Boris, Crawford, Gregory E, Furey, Terrence S

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An Erythroid Enhancer of BCL11A Subject to Genetic Variation Determines Fetal Hemoglobin Level von Bauer, Daniel E., Kamran, Sophia C., Lessard, Samuel, Xu, Jian, Fujiwara, Yuko, Lin, Carrie, Shao, Zhen, Canver, Matthew C., Smith, Elenoe C., Pinello, Luca, Sabo, Peter J., Vierstra, Jeff, Voit, Richard A., Yuan, Guo-Cheng, Porteus, Matthew H., Stamatoyannopoulos, John A., Lettre, Guillaume, Orkin, Stuart H.

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Integrative detection and analysis of structural variation in cancer genomes von Dixon, Jesse R., Xu, Jie, Dileep, Vishnu, Zhan, Ye, Song, Fan, Le, Victoria T., Yardımcı, Galip Gürkan, Chakraborty, Abhijit, Bann, Darrin V., Wang, Yanli, Clark, Royden, Zhang, Lijun, Yang, Hongbo, Liu, Tingting, Iyyanki, Sriranga, An, Lin, Pool, Christopher, Sasaki, Takayo, Rivera-Mulia, Juan Carlos, Ozadam, Hakan, Lajoie, Bryan R., Kaul, Rajinder, Buckley, Michael, Lee, Kristen, Diegel, Morgan, Pezic, Dubravka, Ernst, Christina, Hadjur, Suzana, Odom, Duncan T., Stamatoyannopoulos, John A., Broach, James R., Hardison, Ross C., Ay, Ferhat, Noble, William Stafford, Dekker, Job, Gilbert, David M., Yue, Feng

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Functional footprinting of regulatory DNA von Vierstra, Jeff, Reik, Andreas, Chang, Kai-Hsin, Stehling-Sun, Sandra, Zhou, Yuanyue, Hinkley, Sarah J, Paschon, David E, Zhang, Lei, Psatha, Nikoletta, Bendana, Yuri R, O'Neil, Colleen M, Song, Alexander H, Mich, Andrea K, Liu, Pei-Qi, Lee, Gary, Bauer, Daniel E, Holmes, Michael C, Orkin, Stuart H, Papayannopoulou, Thalia, Stamatoyannopoulos, George, Rebar, Edward J, Gregory, Philip D, Urnov, Fyodor D, Stamatoyannopoulos, John A

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De novo design of protein logic gates von Chen, Zibo, Kibler, Ryan D, Hunt, Andrew, Busch, Florian, Pearl, Jocelynn, Jia, Mengxuan, VanAernum, Zachary L, Wicky, Basile I M, Dods, Galen, Liao, Hanna, Wilken, Matthew S, Ciarlo, Christie, Green, Shon, El-Samad, Hana, Stamatoyannopoulos, John, Wysocki, Vicki H, Jewett, Michael C, Boyken, Scott E, Baker, David

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Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing von Stavreva, Diana A, Coulon, Antoine, Baek, Songjoon, Sung, Myong-Hee, John, Sam, Stixova, Lenka, Tesikova, Martina, Hakim, Ofir, Miranda, Tina, Hawkins, Mary, Stamatoyannopoulos, John A, Chow, Carson C, Hager, Gordon L

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Diverse gene reprogramming events occur in the same spatial clusters of distal regulatory elements von Hakim, Ofir, Sung, Myong-Hee, Voss, Ty C, Splinter, Erik, John, Sam, Sabo, Peter J, Thurman, Robert E, Stamatoyannopoulos, John A, de Laat, Wouter, Hager, Gordon L

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Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA von Turner, Tychele N., Hormozdiari, Fereydoun, Duyzend, Michael H., McClymont, Sarah A., Hook, Paul W., Iossifov, Ivan, Raja, Archana, Baker, Carl, Hoekzema, Kendra, Stessman, Holly A., Zody, Michael C., Nelson, Bradley J., Huddleston, John, Sandstrom, Richard, Smith, Joshua D., Hanna, David, Swanson, James M., Faustman, Elaine M., Bamshad, Michael J., Stamatoyannopoulos, John, Nickerson, Deborah A., McCallion, Andrew S., Darnell, Robert, Eichler, Evan E.

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Positively selected enhancer elements endow osteosarcoma cells with metastatic competence von Morrow, James J, Bayles, Ian, Funnell, Alister P W, Miller, Tyler E, Saiakhova, Alina, Lizardo, Michael M, Bartels, Cynthia F, Kapteijn, Maaike Y, Hung, Stevephen, Mendoza, Arnulfo, Dhillon, Gursimran, Chee, Daniel R, Myers, Jay T, Allen, Frederick, Gambarotti, Marco, Righi, Alberto, DiFeo, Analisa, Rubin, Brian P, Huang, Alex Y, Meltzer, Paul S, Helman, Lee J, Picci, Piero, Versteeg, Henri H, Stamatoyannopoulos, John A, Khanna, Chand, Scacheri, Peter C

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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster von Karpen, Gary H, Park, Peter J, Kharchenko, Peter V, Alekseyenko, Artyom A, Schwartz, Yuri B, Minoda, Aki, Riddle, Nicole C, Ernst, Jason, Sabo, Peter J, Larschan, Erica, Gorchakov, Andrey A, Gu, Tingting, Linder-Basso, Daniela, Plachetka, Annette, Shanower, Gregory, Tolstorukov, Michael Y, Luquette, Lovelace J, Xi, Ruibin, Jung, Youngsook L, Park, Richard W, Bishop, Eric P, Canfield, Theresa P, Sandstrom, Richard, Thurman, Robert E, MacAlpine, David M, Stamatoyannopoulos, John A, Kellis, Manolis, Elgin, Sarah C. R, Kuroda, Mitzi I, Pirrotta, Vincenzo

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Highly Parallel Quantification and Compartment Localization of Transcription Factors and Nuclear Proteins von Federation, Alexander J., Nandakumar, Vivek, Searle, Brian C., Stergachis, Andrew, Wang, Hao, Pino, Lindsay K., Merrihew, Gennifer, Ting, Ying S., Howard, Nicholas, Kutyavin, Tanya, MacCoss, Michael J., Stamatoyannopoulos, John A.

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Associations Between Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variants and Risk of Coronavirus Disease 2019 (COVID-19) Hospitalization Among Confirmed Cases in... von Paredes, Miguel I, Lunn, Stephanie M, Famulare, Michael, Frisbie, Lauren A, Painter, Ian, Burstein, Roy, Roychoudhury, Pavitra, Xie, Hong, Mohamed Bakhash, Shah A, Perez, Ricardo, Lukes, Maria, Ellis, Sean, Sathees, Saraswathi, Mathias, Patrick C, Greninger, Alexander, Starita, Lea M, Frazar, Chris D, Ryke, Erica, Zhong, Weizhi, Gamboa, Luis, Threlkeld, Machiko, Lee, Jover, McDermot, Evan, Truong, Melissa, Nickerson, Deborah A, Bates, Daniel L, Hartman, Matthew E, Haugen, Eric, Nguyen, Truong N, Richards, Joshua D, Rodriguez, Jacob L, Stamatoyannopoulos, John A, Thorland, Eric, Melly, Geoff, Dykema, Philip E, MacKellar, Drew C, Gray, Hannah K, Singh, Avi, Peterson, JohnAric M, Russell, Denny, Torres, Laura Marcela, Lindquist, Scott, Bedford, Trevor, Allen, Krisandra J, Oltean, Hanna N

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