Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections von Salmén, Fredrik, Ståhl, Patrik L., Mollbrink, Annelie, Navarro, José Fernández, Vickovic, Sanja, Frisén, Jonas, Lundeberg, Joakim

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Spatial mapping reveals human adipocyte subpopulations with distinct sensitivities to insulin von Bäckdahl, Jesper, Franzén, Lovisa, Massier, Lucas, Li, Qian, Jalkanen, Jutta, Gao, Hui, Andersson, Alma, Bhalla, Nayanika, Thorell, Anders, Rydén, Mikael, Ståhl, Patrik L., Mejhert, Niklas

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Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis von Franzén, Lovisa, Olsson Lindvall, Martina, Hühn, Michael, Ptasinski, Victoria, Setyo, Laura, Keith, Benjamin P., Collin, Astrid, Oag, Steven, Volckaert, Thomas, Borde, Annika, Lundeberg, Joakim, Lindgren, Julia, Belfield, Graham, Jackson, Sonya, Ollerstam, Anna, Stamou, Marianna, Ståhl, Patrik L., Hornberg, Jorrit J.

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Visual Detection of DNA on Paper Chips von Song, Yajing, Gyarmati, Péter, Araújo, Ana Catarina, Lundeberg, Joakim, Brumer, Harry, Ståhl, Patrik L

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ST Pipeline: an automated pipeline for spatial mapping of unique transcripts von Navarro, José Fernández, Sjöstrand, Joel, Salmén, Fredrik, Lundeberg, Joakim, Ståhl, Patrik L

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Visualization and analysis of gene expression in tissue sections by spatial transcriptomics von Ståhl, Patrik L., Salmén, Fredrik, Vickovic, Sanja, Lundmark, Anna, Navarro, José Fernández, Magnusson, Jens, Giacomello, Stefania, Asp, Michaela, Westholm, Jakub O., Huss, Mikael, Mollbrink, Annelie, Linnarsson, Sten, Codeluppi, Simone, Borg, Åke, Pontén, Fredrik, Costea, Paul Igor, Sahlén, Pelin, Mulder, Jan, Bergmann, Olaf, Lundeberg, Joakim, Frisén, Jonas

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Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing von Hård, Joanna, Al Hakim, Ezeddin, Kindblom, Marie, Björklund, Åsa K, Sennblad, Bengt, Demirci, Ilke, Paterlini, Marta, Reu, Pedro, Borgström, Erik, Ståhl, Patrik L, Michaelsson, Jakob, Mold, Jeff E, Frisén, Jonas

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An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries von Jemt, Anders, Salmén, Fredrik, Lundmark, Anna, Mollbrink, Annelie, Fernández Navarro, José, Ståhl, Patrik L., Yucel-Lindberg, Tülay, Lundeberg, Joakim

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High-definition spatial transcriptomics for in situ tissue profiling von Vickovic, Sanja, Eraslan, Gökcen, Salmén, Fredrik, Klughammer, Johanna, Stenbeck, Linnea, Schapiro, Denis, Äijö, Tarmo, Bonneau, Richard, Bergenstråhle, Ludvig, Navarro, José Fernandéz, Gould, Joshua, Griffin, Gabriel K., Borg, Åke, Ronaghi, Mostafa, Frisén, Jonas, Lundeberg, Joakim, Regev, Aviv, Ståhl, Patrik L.

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Spatial mapping reveals human adipocyte subpopulations with distinct sensitivities to insulin von Bäckdahl, Jesper, Franzén, Lovisa, Massier, Lucas, Li, Qian, Jalkanen, Jutta, Gao, Hui, Andersson, Alma, Bhalla, Nayanika, Thorell, Anders, Rydén, Mikael, Ståhl, Patrik L., Mejhert, Niklas

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Spatial detection of fetal marker genes expressed at low level in adult human heart tissue von Asp, Michaela, Salmén, Fredrik, Ståhl, Patrik L., Vickovic, Sanja, Felldin, Ulrika, Löfling, Marie, Fernandez Navarro, José, Maaskola, Jonas, Eriksson, Maria J., Persson, Bengt, Corbascio, Matthias, Persson, Hans, Linde, Cecilia, Lundeberg, Joakim

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Standalone single- and bi-layered human skin 3D models supported by recombinant silk feature native spatial organization von Gkouma, Savvini, Bhalla, Nayanika, Frapard, Solène, Jönsson, Alexander, Gürbüz, Hakan, Dogan, Asli Aybike, Giacomello, Stefania, Duvfa, Martin, Ståhl, Patrik L, Widhe, Mona, Hedhammar, My

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Massive and parallel expression profiling using microarrayed single-cell sequencing von Vickovic, Sanja, Ståhl, Patrik L., Salmén, Fredrik, Giatrellis, Sarantis, Westholm, Jakub Orzechowski, Mollbrink, Annelie, Navarro, José Fernández, Custodio, Joaquin, Bienko, Magda, Sutton, Lesley-Ann, Rosenquist, Richard, Frisén, Jonas, Lundeberg, Joakim

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A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart von Asp, Michaela, Giacomello, Stefania, Larsson, Ludvig, Wu, Chenglin, Fürth, Daniel, Qian, Xiaoyan, Wärdell, Eva, Custodio, Joaquin, Reimegård, Johan, Salmén, Fredrik, Österholm, Cecilia, Ståhl, Patrik L., Sundström, Erik, Åkesson, Elisabet, Bergmann, Olaf, Bienko, Magda, Månsson-Broberg, Agneta, Nilsson, Mats, Sylvén, Christer, Lundeberg, Joakim

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Gene expression of single cells mapped in tissue sections von Ståhl, Patrik L.

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Toward the Single-Hour High-Quality Genome von Ståhl, Patrik L, Lundeberg, Joakim

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Semla: a versatile toolkit for spatially resolved transcriptomics analysis and visualization von Larsson, Ludvig, Franzén, Lovisa, Ståhl, Patrik L, Lundeberg, Joakim

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Identification and transfer of spatial transcriptomics signatures for cancer diagnosis von Yoosuf, Niyaz, Navarro, José Fernández, Salmén, Fredrik, Ståhl, Patrik L, Daub, Carsten O

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Activated Paper Surfaces for the Rapid Hybridization of DNA through Capillary Transport von Araújo, Ana Catarina, Song, Yajing, Lundeberg, Joakim, Ståhl, Patrik L, Brumer, Harry

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Solid-phase capture and profiling of open chromatin by spatial ATAC von Llorens-Bobadilla, Enric, Zamboni, Margherita, Marklund, Maja, Bhalla, Nayanika, Chen, Xinsong, Hartman, Johan, Frisén, Jonas, Ståhl, Patrik L.

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