Profiling and Bioinformatics Analysis of Differentially Expressed circRNAs in Spinal Ligament Tissues of Patients with Ankylosing Spondylitis von Zheng, Xiujun, Wang, Yingzhen, Sun, Yuanliang, Wei, Ying, Li, Tianmi, Liu, Xiangyun, Liu, Guoming, Kou, Jianqiang, Wang, Ting

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Integrated Bioinformatics Analysis Reveals Function and Regulatory Network of miR-200b-3p in Endometriosis von Tang, Xin, Xu, Yicong, Xie, Qin, Hu, Wanxue, Zhao, Hongbo

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ACPred-FL: a sequence-based predictor using effective feature representation to improve the prediction of anti-cancer peptides von Wei, Leyi, Zhou, Chen, Chen, Huangrong, Song, Jiangning, Su, Ran

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Improving Model Performance on the Stratification of Breast Cancer Patients by Integrating Multiscale Genomic Features von Wen, Zhining, Li, Menglong, Zhao, Yiru, Zhou, Yifan, He, Li, Hao, Yingyi, Jing, Runyu

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DeepTorrent: a deep learning-based approach for predicting DNA N4-methylcytosine sites von Liu, Quanzhong, Chen, Jinxiang, Wang, Yanze, Li, Shuqin, Jia, Cangzhi, Song, Jiangning, Li, Fuyi

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iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences von Chen, Zhen, Zhao, Pei, Li, Fuyi, Leier, André, Marquez-Lago, Tatiana T, Wang, Yanan, Webb, Geoffrey I, Smith, A Ian, Daly, Roger J, Chou, Kuo-Chen, Song, Jiangning

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PreAcrs: a machine learning framework for identifying anti-CRISPR proteins von Zhu, Lin, Wang, Xiaoyu, Li, Fuyi, Song, Jiangning

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DiCleave: a deep learning model for predicting human Dicer cleavage sites von Mu, Lixuan, Song, Jiangning, Akutsu, Tatsuya, Mori, Tomoya

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An Interpretable Prediction Model for Identifying N7-Methylguanosine Sites Based on XGBoost and SHAP von Bi, Yue, Xiang, Dongxu, Ge, Zongyuan, Li, Fuyi, Jia, Cangzhi, Song, Jiangning

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hCKSAAP_UbSite: Improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties von Chen, Zhen, Zhou, Yuan, Song, Jiangning, Zhang, Ziding

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iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization von Chen, Zhen, Zhao, Pei, Li, Chen, Li, Fuyi, Xiang, Dongxu, Chen, Yong-Zi, Akutsu, Tatsuya, Daly, Roger J, Webb, Geoffrey I, Zhao, Quanzhi, Kurgan, Lukasz, Song, Jiangning

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iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data von Chen, Zhen, Zhao, Pei, Li, Fuyi, Marquez-Lago, Tatiana T, Leier, André, Revote, Jerico, Zhu, Yan, Powell, David R, Akutsu, Tatsuya, Webb, Geoffrey I, Chou, Kuo-Chen, Smith, A Ian, Daly, Roger J, Li, Jian, Song, Jiangning

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DeepCleave: a deep learning predictor for caspase and matrix metalloprotease substrates and cleavage sites von Li, Fuyi, Chen, Jinxiang, Leier, André, Marquez-Lago, Tatiana, Liu, Quanzhong, Wang, Yanze, Revote, Jerico, Smith, A Ian, Akutsu, Tatsuya, Webb, Geoffrey I, Kurgan, Lukasz, Song, Jiangning

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GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome von Li, Fuyi, Li, Chen, Wang, Mingjun, Webb, Geoffrey I, Zhang, Yang, Whisstock, James C, Song, Jiangning

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Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features von Chen, Zhen, Zhou, Yuan, Zhang, Ziding, Song, Jiangning

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iProt-Sub: a comprehensive package for accurately mapping and predicting protease-specific substrates and cleavage sites von Song, Jiangning, Wang, Yanan, Li, Fuyi, Akutsu, Tatsuya, Rawlings, Neil D, Webb, Geoffrey I, Chou, Kuo-Chen

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POSSUM: a bioinformatics toolkit for generating numerical sequence feature descriptors based on PSSM profiles von Wang, Jiawei, Yang, Bingjiao, Revote, Jerico, Leier, André, Marquez-Lago, Tatiana T, Webb, Geoffrey, Song, Jiangning, Chou, Kuo-Chen, Lithgow, Trevor

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MULTiPly: a novel multi-layer predictor for discovering general and specific types of promoters von Zhang, Meng, Li, Fuyi, Marquez-Lago, Tatiana T, Leier, André, Fan, Cunshuo, Kwoh, Chee Keong, Chou, Kuo-Chen, Song, Jiangning, Jia, Cangzhi

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Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome von Li, Fuyi, Li, Chen, Marquez-Lago, Tatiana T, Leier, André, Akutsu, Tatsuya, Purcell, Anthony W, Ian Smith, A, Lithgow, Trevor, Daly, Roger J, Song, Jiangning, Chou, Kuo-Chen

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A polytherapy based approach to combat antimicrobial resistance using cubosomes von Lai, Xiangfeng, Han, Mei-Ling, Ding, Yue, Chow, Seong Hoong, Le Brun, Anton P., Wu, Chun-Ming, Bergen, Phillip J., Jiang, Jhih-hang, Hsu, Hsien-Yi, Muir, Benjamin W., White, Jacinta, Song, Jiangning, Li, Jian, Shen, Hsin-Hui

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