A filtering method to generate high quality short reads using illumina paired-end technology von Eren, A Murat, Vineis, Joseph H, Morrison, Hilary G, Sogin, Mitchell L

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The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing von Dethlefsen, Les, Huse, Sue, Sogin, Mitchell L, Relman, David A

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Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing von Huse, Susan M, Dethlefsen, Les, Huber, Julie A, Mark Welch, David, Welch, David Mark, Relman, David A, Sogin, Mitchell L

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Ironing out the wrinkles in the rare biosphere through improved OTU clustering von Huse, Susan M., Welch, David Mark, Morrison, Hilary G., Sogin, Mitchell L.

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The Microbiome and Human Biology von Knight, Rob, Callewaert, Chris, Marotz, Clarisse, Hyde, Embriette R, Debelius, Justine W, McDonald, Daniel, Sogin, Mitchell L

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Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences von Eren, A Murat, Morrison, Hilary G, Lescault, Pamela J, Reveillaud, Julie, Vineis, Joseph H, Sogin, Mitchell L

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Chemical dispersants can suppress the activity of natural oil-degrading microorganisms von Kleindienst, Sara, Seidel, Michael, Ziervogel, Kai, Grim, Sharon, Loftis, Kathy, Harrison, Sarah, Malkin, Sairah Y., Perkins, Matthew J., Field, Jennifer, Sogin, Mitchell L., Dittmar, Thorsten, Passow, Uta, Medeiros, Patricia M., Joye, Samantha B.

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Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data von Eren, A. Murat, Maignien, Loïs, Sul, Woo Jun, Murphy, Leslie G., Grim, Sharon L., Morrison, Hilary G., Sogin, Mitchell L., Freckleton, Robert

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Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing von AGOGUÉ, HÉLÈNE, LAMY, DOMINIQUE, NEAL, PHILLIP R., SOGIN, MITCHELL L., HERNDL, GERHARD J.

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Accuracy and quality of massively parallel DNA pyrosequencing von Huse, Susan M, Huber, Julie A, Morrison, Hilary G, Sogin, Mitchell L, Welch, David Mark

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Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes von Bálint, Miklós, Bahram, Mohammad, Eren, A. Murat, Faust, Karoline, Fuhrman, Jed A., Lindahl, Björn, O'Hara, Robert B., Öpik, Maarja, Sogin, Mitchell L., Unterseher, Martin, Tedersoo, Leho

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Sewage reflects the microbiomes of human populations von Newton, Ryan J, McLellan, Sandra L, Dila, Deborah K, Vineis, Joseph H, Morrison, Hilary G, Eren, A Murat, Sogin, Mitchell L

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Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations von SHANKS, Orin C, KELTY, Catherine A, ARCHIBEQUE, Shawn, JENKINS, Michael, NEWTON, Ryan J, MCLELLAN, Sandra L, HUSE, Susan M, SOGIN, Mitchell L

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VAMPS: a website for visualization and analysis of microbial population structures von Huse, Susan M, Mark Welch, David B, Voorhis, Andy, Shipunova, Anna, Morrison, Hilary G, Eren, A Murat, Sogin, Mitchell L

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The premature infant gut microbiome during the first 6 weeks of life differs based on gestational maturity at birth von Chernikova, Diana A., Madan, Juliette C., Housman, Molly L., Zain-ul-abideen, Muhammad, Lundgren, Sara N., Morrison, Hilary G., Sogin, Mitchell L., Williams, Scott M., Moore, Jason H., Karagas, Margaret R., Hoen, Anne G.

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Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation von ANTONOPOULOS, Dionysios A, HUSE, Susan M, MORRISON, Hilary G, SCHMIDT, Thomas M, SOGIN, Mitchell L, YOUNG, Vincent B

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A Microbial Signature Approach to Identify Fecal Pollution in the Waters Off an Urbanized Coast of Lake Michigan von Newton, Ryan J., Bootsma, Melinda J., Morrison, Hilary G., Sogin, Mitchell L., McLellan, Sandra L.

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Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease von Hogan, Deborah A, Willger, Sven D, Dolben, Emily L, Hampton, Thomas H, Stanton, Bruce A, Morrison, Hilary G, Sogin, Mitchell L, Czum, Julianna, Ashare, Alix

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A single genus in the gut microbiome reflects host preference and specificity von Eren, A Murat, Sogin, Mitchell L, Morrison, Hilary G, Vineis, Joseph H, Fisher, Jenny C, Newton, Ryan J, McLellan, Sandra L

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Comparison of the Microbial Community Structures of Untreated Wastewaters from Different Geographic Locales von SHANKS, Orin C, NEWTON, Ryan J, KELTY, Catherine A, HUSE, Susan M, SOGIN, Mitchell L, MCLELLAN, Sandra L

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