A unique regulatory phase of DNA methylation in the early mammalian embryo von SMITH, Zachary D, CHAN, Michelle M, MIKKELSEN, Tarjei S, HONGCANG GU, GNIRKE, Andreas, REGEV, Aviv, MEISSNER, Alexander

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DNA methylation: roles in mammalian development von Smith, Zachary D., Meissner, Alexander

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DNA Methylation Dynamics during In Vivo Differentiation of Blood and Skin Stem Cells von Bock, Christoph, Beerman, Isabel, Lien, Wen-Hui, Smith, Zachary D., Gu, Hongcang, Boyle, Patrick, Gnirke, Andreas, Fuchs, Elaine, Rossi, Derrick J., Meissner, Alexander

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Proliferation-Dependent Alterations of the DNA Methylation Landscape Underlie Hematopoietic Stem Cell Aging von Beerman, Isabel, Bock, Christoph, Garrison, Brian S., Smith, Zachary D., Gu, Hongcang, Meissner, Alexander, Rossi, Derrick J.

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Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling von Gu, Hongcang, Smith, Zachary D, Bock, Christoph, Boyle, Patrick, Gnirke, Andreas, Meissner, Alexander

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Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages von Andergassen, Daniel, Smith, Zachary D, Kretzmer, Helene, Rinn, John L, Meissner, Alexander

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Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer von Smith, Zachary D., Shi, Jiantao, Gu, Hongcang, Donaghey, Julie, Clement, Kendell, Cacchiarelli, Davide, Gnirke, Andreas, Michor, Franziska, Meissner, Alexander

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Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines von Bock, Christoph, Kiskinis, Evangelos, Verstappen, Griet, Gu, Hongcang, Boulting, Gabriella, Smith, Zachary D., Ziller, Michael, Croft, Gist F., Amoroso, Mackenzie W., Oakley, Derek H., Gnirke, Andreas, Eggan, Kevin, Meissner, Alexander

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Tet1 Regulates Adult Hippocampal Neurogenesis and Cognition von Zhang, Run-Rui, Cui, Qing-Yan, Murai, Kiyohito, Lim, Yen Ching, Smith, Zachary D., Jin, Shengnan, Ye, Peng, Rosa, Luis, Lee, Yew Kok, Wu, Hai-Ping, Liu, Wei, Xu, Zhi-Mei, Yang, Lu, Ding, Yu-Qiang, Tang, Fuchou, Meissner, Alexander, Ding, Chunming, Shi, Yanhong, Xu, Guo-Liang

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Genetic determinants and epigenetic effects of pioneer-factor occupancy von Donaghey, Julie, Thakurela, Sudhir, Charlton, Jocelyn, Chen, Jennifer S., Smith, Zachary D., Gu, Hongcang, Pop, Ramona, Clement, Kendell, Stamenova, Elena K., Karnik, Rahul, Kelley, David R., Gifford, Casey A., Cacchiarelli, Davide, Rinn, John L., Gnirke, Andreas, Ziller, Michael J., Meissner, Alexander

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Dynamic single-cell imaging of direct reprogramming reveals an early specifying event von Smith, Zachary D, Nachman, Iftach, Regev, Aviv, Meissner, Alexander

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Reprogramming Factor Expression Initiates Widespread Targeted Chromatin Remodeling von Koche, Richard P., Smith, Zachary D., Adli, Mazhar, Gu, Hongcang, Ku, Manching, Gnirke, Andreas, Bernstein, Bradley E., Meissner, Alexander

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Hijacking of transcriptional condensates by endogenous retroviruses von Asimi, Vahid, Sampath Kumar, Abhishek, Niskanen, Henri, Riemenschneider, Christina, Hetzel, Sara, Naderi, Julian, Fasching, Nina, Popitsch, Niko, Du, Manyu, Kretzmer, Helene, Smith, Zachary D., Weigert, Raha, Walther, Maria, Mamde, Sainath, Meierhofer, David, Wittler, Lars, Buschow, René, Timmermann, Bernd, Cisse, Ibrahim I., Ameres, Stefan L., Meissner, Alexander, Hnisz, Denes

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Smart-RRBS for single-cell methylome and transcriptome analysis von Gu, Hongcang, Raman, Ayush T., Wang, Xiaoxue, Gaiti, Federico, Chaligne, Ronan, Mohammad, Arman W., Arczewska, Aleksandra, Smith, Zachary D., Landau, Dan A., Aryee, Martin J., Meissner, Alexander, Gnirke, Andreas

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Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution von Gu, Hongcang, Bock, Christoph, Mikkelsen, Tarjei S, Jäger, Natalie, Smith, Zachary D, Tomazou, Eleni, Gnirke, Andreas, Lander, Eric S, Meissner, Alexander

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High-throughput bisulfite sequencing in mammalian genomes von Smith, Zachary D., Gu, Hongcang, Bock, Christoph, Gnirke, Andreas, Meissner, Alexander

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Molecular features of cellular reprogramming and development von Smith, Zachary D., Sindhu, Camille, Meissner, Alexander

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X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes von Hasenbein, Tim P., Hoelzl, Sarah, Smith, Zachary D., Gerhardinger, Chiara, Gonner, Marion O. C., Aguilar-Pimentel, Antonio, Amarie, Oana V., Becker, Lore, Calzada-Wack, Julia, Dragano, Nathalia R. V., da Silva-Buttkus, Patricia, Garrett, Lillian, Hölter, Sabine M., Kraiger, Markus, Östereicher, Manuela A., Rathkolb, Birgit, Sanz-Moreno, Adrián, Spielmann, Nadine, Wurst, Wolfgang, Gailus-Durner, Valerie, Fuchs, Helmut, Hrabě de Angelis, Martin, Meissner, Alexander, Engelhardt, Stefan, Rinn, John L., Andergassen, Daniel

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DNA methylation in mammalian development and disease von Smith, Zachary D., Hetzel, Sara, Meissner, Alexander

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In vivo Firre and Dxz4 deletion elucidates roles for autosomal gene regulation von Andergassen, Daniel, Smith, Zachary D, Lewandowski, Jordan P, Gerhardinger, Chiara, Meissner, Alexander, Rinn, John L

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