An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites von Skene, Peter J, Henikoff, Steven

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Targeted in situ genome-wide profiling with high efficiency for low cell numbers von Skene, Peter J, Henikoff, Jorja G, Henikoff, Steven

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Histone variants in pluripotency and disease von Skene, Peter J, Henikoff, Steven

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A simple method for generating high-resolution maps of genome-wide protein binding von Skene, Peter J, Henikoff, Steven

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Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq von Swanson, Elliott, Lord, Cara, Reading, Julian, Heubeck, Alexander T, Genge, Palak C, Thomson, Zachary, Weiss, Morgan DA, Li, Xiao-Jun, Savage, Adam K, Green, Richard R, Torgerson, Troy R, Bumol, Thomas F, Graybuck, Lucas T, Skene, Peter J

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Neuronal MeCP2 Is Expressed at Near Histone-Octamer Levels and Globally Alters the Chromatin State von Skene, Peter J., Illingworth, Robert S., Webb, Shaun, Kerr, Alastair R.W., James, Keith D., Turner, Daniel J., Andrews, Rob, Bird, Adrian P.

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Persistent serum protein signatures define an inflammatory subcategory of long COVID von Talla, Aarthi, Vasaikar, Suhas V., Szeto, Gregory Lee, Lemos, Maria P., Czartoski, Julie L., MacMillan, Hugh, Moodie, Zoe, Cohen, Kristen W., Fleming, Lamar B., Thomson, Zachary, Okada, Lauren, Becker, Lynne A., Coffey, Ernest M., De Rosa, Stephen C., Newell, Evan W., Skene, Peter J., Li, Xiaojun, Bumol, Thomas F., Juliana McElrath, M., Torgerson, Troy R.

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BarWare: efficient software tools for barcoded single-cell genomics von Swanson, Elliott, Reading, Julian, Graybuck, Lucas T, Skene, Peter J

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CpG islands influence chromatin structure via the CpG-binding protein Cfp1 von Illingworth, Robert, Thomson, John P, Deaton, Aimée, James, Keith D, Skene, Peter J, Bird, Adrian, Clouaire, Thomas, Webb, Shaun, Kerr, Alastair R. W, Selfridge, Jim, Turner, Daniel J, Guy, Jacky, Andrews, Rob

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The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1 von Skene, Peter J, Hernandez, Aaron E, Groudine, Mark, Henikoff, Steven

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MOCHA’s advanced statistical modeling of scATAC-seq data enables functional genomic inference in large human cohorts von Rachid Zaim, Samir, Pebworth, Mark-Phillip, McGrath, Imran, Okada, Lauren, Weiss, Morgan, Reading, Julian, Czartoski, Julie L., Torgerson, Troy R., McElrath, M. Juliana, Bumol, Thomas F., Skene, Peter J., Li, Xiao-jun

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A comprehensive platform for analyzing longitudinal multi-omics data von Vasaikar, Suhas V., Savage, Adam K., Gong, Qiuyu, Swanson, Elliott, Talla, Aarthi, Lord, Cara, Heubeck, Alexander T., Reading, Julian, Graybuck, Lucas T., Meijer, Paul, Torgerson, Troy R., Skene, Peter J., Bumol, Thomas F., Li, Xiao-jun

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DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression von Resnick, Rebecca, Wong, Chao-Jen, Hamm, Danielle C., Bennett, Sean R., Skene, Peter J., Hake, Sandra B., Henikoff, Steven, van der Maarel, Silvère M., Tapscott, Stephen J.

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Transcriptional regulatory networks underlying gene expression changes in Huntington's disease von Ament, Seth A, Pearl, Jocelynn R, Cantle, Jeffrey P, Bragg, Robert M, Skene, Peter J, Coffey, Sydney R, Bergey, Dani E, Wheeler, Vanessa C, MacDonald, Marcy E, Baliga, Nitin S, Rosinski, Jim, Hood, Leroy E, Carroll, Jeffrey B, Price, Nathan D

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Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment von Thomson, Zachary, He, Ziyuan, Swanson, Elliott, Henderson, Katherine, Phalen, Cole, Zaim, Samir Rachid, Pebworth, Mark-Phillip, Okada, Lauren Y., Heubeck, Alexander T., Roll, Charles R., Hernandez, Veronica, Weiss, Morgan, Genge, Palak C., Reading, Julian, Giles, Josephine R., Manne, Sasikanth, Dougherty, Jeanette, Jasen, C. J., Greenplate, Allison R., Becker, Lynne A., Graybuck, Lucas T., Vasaikar, Suhas V., Szeto, Gregory L., Savage, Adam K., Speake, Cate, Buckner, Jane H., Li, Xiao-jun, Bumol, Thomas F., Wherry, E.John, Torgerson, Troy R., Vella, Laura A., Henrickson, Sarah E., Skene, Peter J., Gustafson, Claire E.

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Author Correction: Trimodal single-cell profiling reveals a novel pediatric CD8αα+ T cell subset and broad age-related molecular reprogramming across the T cell compartment von Thomson, Zachary, He, Ziyuan, Swanson, Elliott, Henderson, Katherine, Phalen, Cole, Zaim, Samir Rachid, Pebworth, Mark-Phillip, Okada, Lauren Y., Heubeck, Alexander T., Roll, Charles R., Hernandez, Veronica, Weiss, Morgan, Genge, Palak C., Reading, Julian, Giles, Josephine R., Manne, Sasikanth, Dougherty, Jeanette, Jasen, C. J., Greenplate, Allison R., Becker, Lynne A., Graybuck, Lucas T., Vasaikar, Suhas V., Szeto, Gregory L., Savage, Adam K., Speake, Cate, Buckner, Jane H., Li, Xiao-jun, Bumol, Thomas F., Wherry, E.John, Torgerson, Troy R., Vella, Laura A., Henrickson, Sarah E., Skene, Peter J., Gustafson, Claire E.

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CpG island chromatin is shaped by recruitment of ZF-CxxC proteins von Blackledge, Neil P, Thomson, John P, Skene, Peter J

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Histones push the envelope von Skene, Peter J, Henikoff, Steven

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Chromatin roadblocks to reprogramming 50 years on von Skene, Peter J, Henikoff, Steven

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Multimodal analysis for human ex vivo studies shows extensive molecular changes from delays in blood processing von Savage, Adam K., Gutschow, Miriam V., Chiang, Tony, Henderson, Kathy, Green, Richard, Chaudhari, Monica, Swanson, Elliott, Heubeck, Alexander T., Kondza, Nina, Burley, Kelli C., Genge, Palak C., Lord, Cara, Smith, Tanja, Thomson, Zachary, Beaubien, Aldan, Johnson, Ed, Goldy, Jeff, Bolouri, Hamid, Buckner, Jane H., Meijer, Paul, Coffey, Ernest M., Skene, Peter J., Torgerson, Troy R., Li, Xiao-jun, Bumol, Thomas F.

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