Individual brain organoids reproducibly form cell diversity of the human cerebral cortex von Velasco, Silvia, Kedaigle, Amanda J., Simmons, Sean K., Nash, Allison, Rocha, Marina, Quadrato, Giorgia, Paulsen, Bruna, Nguyen, Lan, Adiconis, Xian, Regev, Aviv, Levin, Joshua Z., Arlotta, Paola

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Systematic comparison of single-cell and single-nucleus RNA-sequencing methods von Ding, Jiarui, Adiconis, Xian, Simmons, Sean K., Kowalczyk, Monika S., Hession, Cynthia C., Marjanovic, Nemanja D., Hughes, Travis K., Wadsworth, Marc H., Burks, Tyler, Nguyen, Lan T., Kwon, John Y. H., Barak, Boaz, Ge, William, Kedaigle, Amanda J., Carroll, Shaina, Li, Shuqiang, Hacohen, Nir, Rozenblatt-Rosen, Orit, Shalek, Alex K., Villani, Alexandra-Chloé, Regev, Aviv, Levin, Joshua Z.

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Single-cell transcriptomic profiling of the aging mouse brain von Ximerakis, Methodios, Lipnick, Scott L., Innes, Brendan T., Simmons, Sean K., Adiconis, Xian, Dionne, Danielle, Mayweather, Brittany A., Nguyen, Lan, Niziolek, Zachary, Ozek, Ceren, Butty, Vincent L., Isserlin, Ruth, Buchanan, Sean M., Levine, Stuart S., Regev, Aviv, Bader, Gary D., Levin, Joshua Z., Rubin, Lee L.

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In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes von Jin, Xin, Simmons, Sean K, Guo, Amy, Shetty, Ashwin S, Ko, Michelle, Nguyen, Lan, Jokhi, Vahbiz, Robinson, Elise, Oyler, Paul, Curry, Nathan, Deangeli, Giulio, Lodato, Simona, Levin, Joshua Z, Regev, Aviv, Zhang, Feng, Arlotta, Paola

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Autism genes converge on asynchronous development of shared neuron classes von Paulsen, Bruna, Velasco, Silvia, Kedaigle, Amanda J., Pigoni, Martina, Quadrato, Giorgia, Deo, Anthony J., Adiconis, Xian, Uzquiano, Ana, Sartore, Rafaela, Yang, Sung Min, Simmons, Sean K., Symvoulidis, Panagiotis, Kim, Kwanho, Tsafou, Kalliopi, Podury, Archana, Abbate, Catherine, Tucewicz, Ashley, Smith, Samantha N., Albanese, Alexandre, Barrett, Lindy, Sanjana, Neville E., Shi, Xi, Chung, Kwanghun, Lage, Kasper, Boyden, Edward S., Regev, Aviv, Levin, Joshua Z., Arlotta, Paola

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Distinct subnetworks of the thalamic reticular nucleus von Li, Yinqing, Lopez-Huerta, Violeta G., Adiconis, Xian, Levandowski, Kirsten, Choi, Soonwook, Simmons, Sean K., Arias-Garcia, Mario A., Guo, Baolin, Yao, Annie Y., Blosser, Timothy R., Wimmer, Ralf D., Aida, Tomomi, Atamian, Alexander, Naik, Tina, Sun, Xuyun, Bi, Dasheng, Malhotra, Diya, Hession, Cynthia C., Shema, Reut, Gomes, Marcos, Li, Taibo, Hwang, Eunjin, Krol, Alexandra, Kowalczyk, Monika, Peça, João, Pan, Gang, Halassa, Michael M., Levin, Joshua Z., Fu, Zhanyan, Feng, Guoping

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Comprehensive comparative analysis of 5′-end RNA-sequencing methods von Adiconis, Xian, Haber, Adam L., Simmons, Sean K., Levy Moonshine, Ami, Ji, Zhe, Busby, Michele A., Shi, Xi, Jacques, Justin, Lancaster, Madeline A., Pan, Jen Q., Regev, Aviv, Levin, Joshua Z.

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The effect of background noise and its removal on the analysis of single-cell expression data von Janssen, Philipp, Kliesmete, Zane, Vieth, Beate, Adiconis, Xian, Simmons, Sean, Marshall, Jamie, McCabe, Cristin, Heyn, Holger, Levin, Joshua Z, Enard, Wolfgang, Hellmann, Ines

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Brain-region-specific changes in neurons and glia and dysregulation of dopamine signaling in Grin2a mutant mice von Farsi, Zohreh, Nicolella, Ally, Simmons, Sean K., Aryal, Sameer, Shepard, Nate, Brenner, Kira, Lin, Sherry, Herzog, Linnea, Moran, Sean P., Stalnaker, Katherine J., Shin, Wangyong, Gazestani, Vahid, Song, Bryan J., Bonanno, Kevin, Keshishian, Hasmik, Carr, Steven A., Pan, Jen Q., Macosko, Evan Z., Datta, Sandeep Robert, Dejanovic, Borislav, Kim, Eunjoon, Levin, Joshua Z., Sheng, Morgan

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Mostly natural sequencing-by-synthesis for scRNA-seq using Ultima sequencing von Simmons, Sean K., Lithwick-Yanai, Gila, Adiconis, Xian, Oberstrass, Florian, Iremadze, Nika, Geiger-Schuller, Kathryn, Thakore, Pratiksha I., Frangieh, Chris J., Barad, Omer, Almogy, Gilad, Rozenblatt-Rosen, Orit, Regev, Aviv, Lipson, Doron, Levin, Joshua Z.

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Massively parallel in vivo Perturb-seq reveals cell-type-specific transcriptional networks in cortical development von Zheng, Xinhe, Wu, Boli, Liu, Yuejia, Simmons, Sean K., Kim, Kwanho, Clarke, Grace S., Ashiq, Abdullah, Park, Joshua, Li, Jiwen, Wang, Zhilin, Tong, Liqi, Wang, Qizhao, Rajamani, Keerthi T., Muñoz-Castañeda, Rodrigo, Mu, Shang, Qi, Tianbo, Zhang, Yunxiao, Ngiam, Zi Chao, Ohte, Naoto, Hanashima, Carina, Wu, Zhuhao, Xu, Xiangmin, Levin, Joshua Z., Jin, Xin

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Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity von Sorek, Matan, Oweis, Walaa, Nissim-Rafinia, Malka, Maman, Moria, Simon, Shahar, Hession, Cynthia C, Adiconis, Xian, Simmons, Sean K, Sanjana, Neville E, Shi, Xi, Lu, Congyi, Pan, Jen Q, Xu, Xiaohong, Pouladi, Mahmoud A, Ellerby, Lisa M, Zhang, Feng, Levin, Joshua Z, Meshorer, Eran

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Establishment of an Engaged and Active Learning Community in the Biology Classroom and Lab with Discord von Wiles, Amy M, Simmons, Sean L

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Genetic analysis of isoform usage in the human anti-viral response reveals influenza-specific regulation of ERAP2 transcripts under balancing selection von Ye, Chun Jimmie, Chen, Jenny, Villani, Alexandra-Chloé, Gate, Rachel E, Subramaniam, Meena, Bhangale, Tushar, Lee, Mark N, Raj, Towfique, Raychowdhury, Raktima, Li, Weibo, Rogel, Noga, Simmons, Sean, Imboywa, Selina H, Chipendo, Portia I, McCabe, Cristin, Lee, Michelle H, Frohlich, Irene Y, Stranger, Barbara E, De Jager, Philip L, Regev, Aviv, Behrens, Tim, Hacohen, Nir

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Realizing privacy preserving genome-wide association studies von Simmons, Sean, Berger, Bonnie

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Heterochronic parabiosis reprograms the mouse brain transcriptome by shifting aging signatures in multiple cell types von Ximerakis, Methodios, Holton, Kristina M, Giadone, Richard M, Ozek, Ceren, Saxena, Monika, Santiago, Samara, Adiconis, Xian, Dionne, Danielle, Nguyen, Lan, Shah, Kavya M, Goldstein, Jill M, Gasperini, Caterina, Gampierakis, Ioannis A, Lipnick, Scott L, Simmons, Sean K, Buchanan, Sean M, Wagers, Amy J, Regev, Aviv, Levin, Joshua Z, Rubin, Lee L

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Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods von Ding, Jiarui, Adiconis, Xian, Simmons, Sean K., Kowalczyk, Monika S., Hession, Cynthia C., Marjanovic, Nemanja D., Hughes, Travis K., Wadsworth, Marc H., Burks, Tyler, Nguyen, Lan T., Kwon, John Y. H., Barak, Boaz, Ge, William, Kedaigle, Amanda J., Carroll, Shaina, Li, Shuqiang, Hacohen, Nir, Rozenblatt-Rosen, Orit, Shalek, Alex K., Villani, Alexandra-Chloé, Regev, Aviv, Levin, Joshua Z.

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Rapid Point-of-Care Antigen and Molecular Tests for Diagnosis of SARS-CoV-2 Infection von Simmons, Sean, Saguil, Aaron

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Author Correction: Comprehensive comparative analysis of 5′-end RNA-sequencing methods von Adiconis, Xian, Haber, Adam L., Simmons, Sean K., Moonshine, Ami Levy, Ji, Zhe, Busby, Michele A., Shi, Xi, Jacques, Justin, Lancaster, Madeline A., Pan, Jen Q., Regev, Aviv, Levin, Joshua Z.

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Enabling Privacy-Preserving GWASs in Heterogeneous Human Populations von Simmons, Sean, Sahinalp, Cenk, Berger, Bonnie

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