Narrow thermal tolerance and low dispersal drive higher speciation in tropical mountains von Polato, Nicholas R., Gill, Brian A., Shah, Alisha A., Gray, Miranda M., Casner, Kayce L., Barthelet, Antoine, Messer, Philipp W., Simmons, Mark P., Guayasamin, Juan M., Encalada, Andrea C., Kondratieff, Boris C., Flecker, Alexander S., Thomas, Steven A., Ghalambor, Cameron K., Poff, N. LeRoy, Funk, W. Chris, Zamudio, Kelly R.

Volltext

Relative benefits of amino-acid, codon, degeneracy, DNA, and purine-pyrimidine character coding for phylogenetic analyses of exons von Simmons, Mark P.

Volltext

The Complete Plastid Genome of Lagerstroemia fauriei and Loss of rpl2 Intron from Lagerstroemia (Lythraceae) von Gu, Cuihua, Tembrock, Luke R, Johnson, Nels G, Simmons, Mark P, Wu, Zhiqiang

Volltext

ILS-Aware Analysis of Low-Homoplasy Retroelement Insertions: Inference of Species Trees and Introgression Using Quartets von Springer, Mark S, Molloy, Erin K, Sloan, Daniel B, Simmons, Mark P, Gatesy, John

Volltext

Gaps as Characters in Sequence-Based Phylogenetic Analyses von Simmons, Mark P., Ochoterena, Helga

Volltext

Miocene Dispersal Drives Island Radiations in the Palm Tribe Trachycarpeae (Arecaceae) von Bacon, Christine D, Baker, William J, Simmons, Mark P

Volltext

How meaningful are Bayesian support values? von Simmons, Mark P, Pickett, Kurt M, Miya, Masaki

Volltext

Resolution of a concatenation/coalescence kerfuffle: partitioned coalescence support and a robust family‐level tree for Mammalia von Gatesy, John, Meredith, Robert W., Janecka, Jan E., Simmons, Mark P., Murphy, William J., Springer, Mark S.

Volltext

Collapsing dubiously resolved gene-tree branches in phylogenomic coalescent analyses von Simmons, Mark P., Gatesy, John

Volltext

Ten Simple Rules for Writing a Reply Paper von Simmons, Mark P

Volltext

Thistle be a mess: Untangling the taxonomy of Cirsium (Cardueae: Compositae) in North America von Ackerfield, Jennifer R., Keil, David J., Hodgson, Wendy C., Simmons, Mark. P., Fehlberg, Shannon D., Funk, Vicki A.

Volltext

Coalescence vs. concatenation: Sophisticated analyses vs. first principles applied to rooting the angiosperms von Simmons, Mark P., Gatesy, John

Volltext

Rapid intraspecific evolution of miRNA and siRNA genes in the mosquito Aedes aegypti von Bernhardt, Scott A, Simmons, Mark P, Olson, Ken E, Beaty, Barry J, Blair, Carol D, Black, William C

Volltext

A confounding effect of missing data on character conflict in maximum likelihood and Bayesian MCMC phylogenetic analyses von Simmons, Mark P.

Volltext

The relative performance of indel-coding methods in simulations von Simmons, Mark P., Müller, Kai, Norton, Andrew P.

Volltext

Misleading results of likelihood-based phylogenetic analyses in the presence of missing data von Simmons, Mark P.

Volltext

Comprehensive comparative analysis of kinesins in photosynthetic eukaryotes von Richardson, Dale N, Simmons, Mark P, Reddy, Anireddy S N

Volltext

Radical instability and spurious branch support by likelihood when applied to matrices with non-random distributions of missing data von Simmons, Mark P.

Volltext

Evolution of selenium hyperaccumulation in Stanleya (Brassicaceae) as inferred from phylogeny, physiology and X‐ray microprobe analysis von Cappa, Jennifer J, Yetter, Crystal, Fakra, Sirine, Cappa, Patrick J, DeTar, Rachael, Landes, Corbett, Pilon‐Smits, Elizabeth A. H, Simmons, Mark P

Volltext

Divergence and support among slightly suboptimal likelihood gene trees von Simmons, Mark P., Kessenich, John

Volltext