Machine learning-aided engineering of hydrolases for PET depolymerization von Lu, Hongyuan, Diaz, Daniel J., Czarnecki, Natalie J., Zhu, Congzhi, Kim, Wantae, Shroff, Raghav, Acosta, Daniel J., Alexander, Bradley R., Cole, Hannah O., Zhang, Yan, Lynd, Nathaniel A., Ellington, Andrew D., Alper, Hal S.

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Synthetic evolutionary origin of a proofreading reverse transcriptase von Ellefson, Jared W., Gollihar, Jimmy, Shroff, Raghav, Shivram, Haridha, Iyer, Vishwanath R., Ellington, Andrew D.

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Discovery of Novel Gain-of-Function Mutations Guided by Structure-Based Deep Learning von Shroff, Raghav, Cole, Austin W, Diaz, Daniel J, Morrow, Barrett R, Donnell, Isaac, Annapareddy, Ankur, Gollihar, Jimmy, Ellington, Andrew D, Thyer, Ross

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Microbiota and Metatranscriptome Changes Accompanying the Onset of Gingivitis von Nowicki, Emily M, Shroff, Raghav, Singleton, Jacqueline A, Renaud, Diane E, Wallace, Debra, Drury, Julie, Zirnheld, Jolene, Colleti, Brock, Ellington, Andrew D, Lamont, Richard J, Scott, David A, Whiteley, Marvin

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Cellular reagents for diagnostics and synthetic biology von Bhadra, Sanchita, Pothukuchy, Arti, Shroff, Raghav, Cole, Austin W, Byrom, Michelle, Ellefson, Jared W, Gollihar, Jimmy D, Ellington, Andrew D

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Fragile X AGG analysis provides new risk predictions for 45-69 repeat alleles von Nolin, Sarah L., Sah, Sachin, Glicksman, Anne, Sherman, Stephanie L., Allen, Emily, Berry-Kravis, Elizabeth, Tassone, Flora, Yrigollen, Carolyn, Cronister, Amy, Jodah, Marcia, Ersalesi, Nicole, Dobkin, Carl, Brown, W. Ted, Shroff, Raghav, Latham, Gary J., Hadd, Andrew G.

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SARS-COV-2 Omicron variants conformationally escape a rare quaternary antibody binding mode von Goike, Jule, Hsieh, Ching-Lin, Horton, Andrew P., Gardner, Elizabeth C., Zhou, Ling, Bartzoka, Foteini, Wang, Nianshuang, Javanmardi, Kamyab, Herbert, Andrew, Abbassi, Shawn, Xie, Xuping, Xia, Hongjie, Shi, Pei-Yong, Renberg, Rebecca, Segall-Shapiro, Thomas H., Terrace, Cynthia I., Wu, Wesley, Shroff, Raghav, Byrom, Michelle, Ellington, Andrew D., Marcotte, Edward M., Musser, James M., Kuchipudi, Suresh V., Kapur, Vivek, Georgiou, George, Weaver, Scott C., Dye, John M., Boutz, Daniel R., McLellan, Jason S., Gollihar, Jimmy D.

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DLPacker: Deep learning for prediction of amino acid side chain conformations in proteins von Misiura, Mikita, Shroff, Raghav, Thyer, Ross, Kolomeisky, Anatoly B.

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Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals von Olson, Evan J, Hartsough, Lucas A, Landry, Brian P, Shroff, Raghav, Tabor, Jeffrey J

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Evolution of a Thermophilic Strand-Displacing Polymerase Using High-Temperature Isothermal Compartmentalized Self-Replication von Milligan, John N, Shroff, Raghav, Garry, Daniel J, Ellington, Andrew D

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Improved Bst DNA Polymerase Variants Derived via a Machine Learning Approach von Paik, Inyup, Ngo, Phuoc H. T., Shroff, Raghav, Diaz, Daniel J., Maranhao, Andre C., Walker, David J.F., Bhadra, Sanchita, Ellington, Andrew D.

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Custom selenoprotein production enabled by laboratory evolution of recoded bacterial strains von Thyer, Ross, Shroff, Raghav, Klein, Dustin R, d'Oelsnitz, Simon, Cotham, Victoria C, Byrom, Michelle, Brodbelt, Jennifer S, Ellington, Andrew D

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Directed evolution of an orthogonal transcription engine for programmable gene expression in eukaryotes von Kar, Shaunak, Gardner, Elizabeth C., Javanmardi, Kamyab, Boutz, Daniel R., Shroff, Raghav, Horton, Andrew P., Segall-Shapiro, Thomas H., Ellington, Andrew D., Gollihar, Jimmy

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Evolving Bacterial Fitness with an Expanded Genetic Code von Tack, Drew S., Cole, Austin C., Shroff, Raghav, Morrow, Barrett R., Ellington, Andrew D.

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Recovery of Information Stored in Modified DNA with an Evolved Polymerase von Shroff, Raghav, Ellefson, Jared W, Wang, Siyuan S, Boulgakov, Alexander A, Hughes, Randall A, Ellington, Andrew D

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COMPOSITIONS AND METHODS RELATING TO ENGINEERED RNA POLYMERASES WITH CAPPING ENZYMES von KAR, Shaunak, ELLINGTON, Andrew, GARDNER, Elizabeth, GOLLIHAR, Jimmy, SHROFF, Raghav

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SYSTEM AND METHODS FOR INCREASING SYNTHESIZED PROTEIN STABILITY von Cole, Austin, Ellington, Andrew, Thyer, Ross, Shroff, Raghav

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Methods for nucleic acid size detection of repeat sequences von Printy, Blake, Shroff, Raghav, Bram, Eran, Hadd, Andrew

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ENGINEERED HUMAN SERINE DEHYDRATASE ENZYMES AND METHODS FOR TREATING CANCER von CAYIR, Ebru, DIAZ, Daniel, STONE, Everett, SHROFF, Raghav

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COMPOSITIONS AND METHODS RELATING TO ENGINEERED RNA POLYMERASES WITH CAPPING ENZYMES von KAR, Shaunak, ELLINGTON, Andrew, GARDNER, Elizabeth, GOLLIHAR, Jimmy, SHROFF, Raghav

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