Identification and Quantification of Proteoforms by Mass Spectrometry von Schaffer, Leah V., Millikin, Robert J., Miller, Rachel M., Anderson, Lissa C., Fellers, Ryan T., Ge, Ying, Kelleher, Neil L., LeDuc, Richard D., Liu, Xiaowen, Payne, Samuel H., Sun, Liangliang, Thomas, Paul M., Tucholski, Trisha, Wang, Zhe, Wu, Si, Wu, Zhijie, Yu, Dahang, Shortreed, Michael R., Smith, Lloyd M.

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Enhanced protein isoform characterization through long-read proteogenomics von Miller, Rachel M, Jordan, Ben T, Mehlferber, Madison M, Jeffery, Erin D, Chatzipantsiou, Christina, Kaur, Simi, Millikin, Robert J, Dai, Yunxiang, Tiberi, Simone, Castaldi, Peter J, Shortreed, Michael R, Luckey, Chance John, Conesa, Ana, Smith, Lloyd M, Deslattes Mays, Anne, Sheynkman, Gloria M

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Sirt3 Promotes the Urea Cycle and Fatty Acid Oxidation during Dietary Restriction von Hallows, William C., Yu, Wei, Smith, Brian C., Devires, Mark K., Ellinger, James J., Someya, Shinichi, Shortreed, Michael R., Prolla, Tomas, Markley, John L., Smith, Lloyd M., Zhao, Shimin, Guan, Kun-Liang, Denu, John M.

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Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation von Sheynkman, Gloria M, Shortreed, Michael R, Cesnik, Anthony J, Smith, Lloyd M

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Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations von Sheynkman, Gloria M, Johnson, James E, Jagtap, Pratik D, Shortreed, Michael R, Onsongo, Getiria, Frey, Brian L, Griffin, Timothy J, Smith, Lloyd M

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O-Pair Search with MetaMorpheus for O-glycopeptide characterization von Lu, Lei, Riley, Nicholas M., Shortreed, Michael R., Bertozzi, Carolyn R., Smith, Lloyd M.

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Proteomics in non-human primates: utilizing RNA-Seq data to improve protein identification by mass spectrometry in vervet monkeys von Proffitt, J Michael, Glenn, Jeremy, Cesnik, Anthony J, Jadhav, Avinash, Shortreed, Michael R, Smith, Lloyd M, Kavanagh, Kylie, Cox, Laura A, Olivier, Michael

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Enhanced Global Post-translational Modification Discovery with MetaMorpheus von Solntsev, Stefan K, Shortreed, Michael R, Frey, Brian L, Smith, Lloyd M

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Sequence-specific capture of protein-DNA complexes for mass spectrometric protein identification von Wu, Cheng-Hsien, Chen, Siyuan, Shortreed, Michael R, Kreitinger, Gloria M, Yuan, Yuan, Frey, Brian L, Zhang, Yi, Mirza, Shama, Cirillo, Lisa A, Olivier, Michael, Smith, Lloyd M

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Analysis of Cell Surface Carbohydrate Expression Patterns in Normal and Tumorigenic Human Breast Cell Lines Using Lectin Arrays von Chen, Siyuan, Zheng, Ting, Shortreed, Michael R, Alexander, Caroline, Smith, Lloyd M

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Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance von Zaidan, Nur Zafirah, Walker, Kolin J., Brown, Jaime E., Schaffer, Leah V., Scalf, Mark, Shortreed, Michael R., Iyer, Gopal, Smith, Lloyd M., Sridharan, Rupa

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Multiplexed analysis of cage and cage free chicken egg fatty acids using stable isotope labeling and mass spectrometry von Torde, Richard G, Therrien, Andrew J, Shortreed, Michael R, Smith, Lloyd M, Lamos, Shane M

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Ultrafast Peptide Label-Free Quantification with FlashLFQ von Millikin, Robert J, Solntsev, Stefan K, Shortreed, Michael R, Smith, Lloyd M

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Proteomic pathways to metabolic disease and type 2 diabetes in the pancreatic islet von Yau, Belinda, Naghiloo, Sheyda, Diaz-Vegas, Alexis, Carr, Austin V., Van Gerwen, Julian, Needham, Elise J., Jevon, Dillon, Chen, Sing-Young, Hoehn, Kyle L., Brandon, Amanda E., Macia, Laurence, Cooney, Gregory J., Shortreed, Michael R., Smith, Lloyd M., Keller, Mark P., Thorn, Peter, Larance, Mark, James, David E., Humphrey, Sean J., Kebede, Melkam A.

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Global Identification of Post-Translationally Spliced Peptides with Neo-Fusion von Rolfs, Zach, Solntsev, Stefan K, Shortreed, Michael R, Frey, Brian L, Smith, Lloyd M

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Relative Quantification of Carboxylic Acid Metabolites by Liquid Chromatography−Mass Spectrometry Using Isotopic Variants of Cholamine von Lamos, Shane M, Shortreed, Michael R, Frey, Brian L, Belshaw, Peter J, Smith, Lloyd M

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Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data von Schaffer, Leah V, Millikin, Robert J, Shortreed, Michael R, Scalf, Mark, Smith, Lloyd M

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Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform von Mehta, Subina, Easterly, Caleb W, Sajulga, Ray, Millikin, Robert J, Argentini, Andrea, Eguinoa, Ignacio, Martens, Lennart, Shortreed, Michael R, Smith, Lloyd M, McGowan, Thomas, Kumar, Praveen, Johnson, James E, Griffin, Timothy J, Jagtap, Pratik D

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Fast, Free, and Flexible Peptide and Protein Quantification with FlashLFQ von Millikin, Robert J., Shortreed, Michael R., Scalf, Mark, Smith, Lloyd M.

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Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq von Sheynkman, Gloria M., Shortreed, Michael R., Frey, Brian L., Smith, Lloyd M.

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