A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures von Shiraishi, Yuichi, Tremmel, Georg, Miyano, Satoru, Stephens, Matthew

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Mutational landscape and clonal architecture in grade II and III gliomas von Suzuki, Hiromichi, Aoki, Kosuke, Chiba, Kenichi, Sato, Yusuke, Shiozawa, Yusuke, Shiraishi, Yuichi, Shimamura, Teppei, Niida, Atsushi, Motomura, Kazuya, Ohka, Fumiharu, Yamamoto, Takashi, Tanahashi, Kuniaki, Ranjit, Melissa, Wakabayashi, Toshihiko, Yoshizato, Tetsuichi, Kataoka, Keisuke, Yoshida, Kenichi, Nagata, Yasunobu, Sato-Otsubo, Aiko, Tanaka, Hiroko, Sanada, Masashi, Kondo, Yutaka, Nakamura, Hideo, Mizoguchi, Masahiro, Abe, Tatsuya, Muragaki, Yoshihiro, Watanabe, Reiko, Ito, Ichiro, Miyano, Satoru, Natsume, Atsushi, Ogawa, Seishi

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C-CAT: The National Datacenter for Cancer Genomic Medicine in Japan von Kohno, Takashi, Kato, Mamoru, Kohsaka, Shinji, Sudo, Tomohisa, Tamai, Ikuo, Shiraishi, Yuichi, Okuma, Yusuke, Ogasawara, Daisuke, Suzuki, Tatsuya, Yoshida, Teruhiko, Mano, Hiroyuki

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Integrated molecular analysis of clear-cell renal cell carcinoma von Sato, Yusuke, Yoshizato, Tetsuichi, Shiraishi, Yuichi, Maekawa, Shigekatsu, Okuno, Yusuke, Kamura, Takumi, Shimamura, Teppei, Sato-Otsubo, Aiko, Nagae, Genta, Suzuki, Hiromichi, Nagata, Yasunobu, Yoshida, Kenichi, Kon, Ayana, Suzuki, Yutaka, Chiba, Kenichi, Tanaka, Hiroko, Niida, Atsushi, Fujimoto, Akihiro, Tsunoda, Tatsuhiko, Morikawa, Teppei, Maeda, Daichi, Kume, Haruki, Sugano, Sumio, Fukayama, Masashi, Aburatani, Hiroyuki, Sanada, Masashi, Miyano, Satoru, Homma, Yukio, Ogawa, Seishi

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Aberrant PD-L1 expression through 3′-UTR disruption in multiple cancers von Kataoka, Keisuke, Shiraishi, Yuichi, Takeda, Yohei, Sakata, Seiji, Matsumoto, Misako, Nagano, Seiji, Maeda, Takuya, Nagata, Yasunobu, Kitanaka, Akira, Mizuno, Seiya, Tanaka, Hiroko, Chiba, Kenichi, Ito, Satoshi, Watatani, Yosaku, Kakiuchi, Nobuyuki, Suzuki, Hiromichi, Yoshizato, Tetsuichi, Yoshida, Kenichi, Sanada, Masashi, Itonaga, Hidehiro, Imaizumi, Yoshitaka, Totoki, Yasushi, Munakata, Wataru, Nakamura, Hiromi, Hama, Natsuko, Shide, Kotaro, Kubuki, Yoko, Hidaka, Tomonori, Kameda, Takuro, Masuda, Kyoko, Minato, Nagahiro, Kashiwase, Koichi, Izutsu, Koji, Takaori-Kondo, Akifumi, Miyazaki, Yasushi, Takahashi, Satoru, Shibata, Tatsuhiro, Kawamoto, Hiroshi, Akatsuka, Yoshiki, Shimoda, Kazuya, Takeuchi, Kengo, Seya, Tsukasa, Miyano, Satoru, Ogawa, Seishi

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Single-cell analysis based dissection of clonality in myelofibrosis von Mylonas, Elena, Yoshida, Kenichi, Frick, Mareike, Hoyer, Kaja, Christen, Friederike, Kaeda, Jaspal, Obenaus, Matthias, Noerenberg, Daniel, Hennch, Cornelius, Chan, Willy, Ochi, Yotaro, Shiraishi, Yuichi, Shiozawa, Yusuke, Zenz, Thorsten, Oakes, Christopher C., Sawitzki, Birgit, Schwarz, Michaela, Bullinger, Lars, le Coutre, Philipp, Rose-Zerilli, Matthew J. J., Ogawa, Seishi, Damm, Frederik

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Haploinsufficiency of TNFAIP3 (A20) by germline mutation is involved in autoimmune lymphoproliferative syndrome von Takagi, Masatoshi, M.D., Ph.D, Ogata, Shohei, M.D., Ph.D, Ueno, Hiroo, M.D, Yoshida, Kenichi, M.D., Ph.D, Yeh, Tzuwen, B.Sc, Hoshino, Akihiro, M.D., Ph.D, Piao, Jinhua, D.D.S., Ph. D, Yamashita, Motoy, M.D, Nanya, Mai, Ph. D, Okano, Tsubasa, M.D, Kajiwara, Michiko, M.D., Ph.D, Kanegane, Hirokazu, M.D., Ph.D, Muramatsu, Hideki, M.D., Ph.D, Okuno, Yusuke, M.D., Ph.D, Shiraishi, Yuichi, M.D., Ph.D, Chiba, Kenichi, B.A, Tanaka, Hiroko, B.S, Bando, Yuki, M.D., Ph.D, Kato, Motohiro, M.D., Ph.D, Hayashi, Yasuhide, M.D., Ph.D, Miyano, Satoru, Ph.D, Imai, Kohsuke, M.D., Ph.D, Ogawa, Seishi, M.D., Ph.D, Kojima, Seiji, M.D., Ph.D, Morio, Tomohiro, M.D., Ph.D

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Landscape and function of multiple mutations within individual oncogenes von Saito, Yuki, Koya, Junji, Araki, Mitsugu, Kogure, Yasunori, Shingaki, Sumito, Tabata, Mariko, McClure, Marni B., Yoshifuji, Kota, Matsumoto, Shigeyuki, Isaka, Yuta, Tanaka, Hiroko, Kanai, Takanori, Miyano, Satoru, Shiraishi, Yuichi, Okuno, Yasushi, Kataoka, Keisuke

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Molecular heterogeneity in peripheral T-cell lymphoma, not otherwise specified revealed by comprehensive genetic profiling von Watatani, Yosaku, Sato, Yasuharu, Miyoshi, Hiroaki, Sakamoto, Kana, Nishida, Kenji, Gion, Yuka, Nagata, Yasunobu, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Zhao, Lanying, Ochi, Yotaro, Takeuchi, Yasuhide, Takeda, June, Ueno, Hiroo, Kogure, Yasunori, Shiozawa, Yusuke, Kakiuchi, Nobuyuki, Yoshizato, Tetsuichi, Nakagawa, Masahiro M., Nanya, Yasuhito, Yoshida, Kenichi, Makishima, Hideki, Sanada, Masashi, Sakata-Yanagimoto, Mamiko, Chiba, Shigeru, Matsuoka, Ryota, Noguchi, Masayuki, Hiramoto, Nobuhiro, Ishikawa, Takayuki, Kitagawa, Junichi, Nakamura, Nobuhiko, Tsurumi, Hisashi, Miyazaki, Tatsuhiko, Kito, Yusuke, Miyano, Satoru, Shimoda, Kazuya, Takeuchi, Kengo, Ohshima, Koichi, Yoshino, Tadashi, Ogawa, Seishi, Kataoka, Keisuke

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Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types von Fujimoto, Akihiro, Fujita, Masashi, Hasegawa, Takanori, Wong, Jing Hao, Maejima, Kazuhiro, Oku-Sasaki, Aya, Nakano, Kaoru, Shiraishi, Yuichi, Miyano, Satoru, Yamamoto, Go, Akagi, Kiwamu, Imoto, Seiya, Nakagawa, Hidewaki

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Genomic Landscape of Esophageal Squamous Cell Carcinoma in a Japanese Population von Sawada, Genta, Niida, Atsushi, Uchi, Ryutaro, Hirata, Hidenari, Shimamura, Teppei, Suzuki, Yutaka, Shiraishi, Yuichi, Chiba, Kenichi, Imoto, Seiya, Takahashi, Yusuke, Iwaya, Takeshi, Sudo, Tomoya, Hayashi, Tomoatsu, Takai, Hiroki, Kawasaki, Yoshihiro, Matsukawa, Takashi, Eguchi, Hidetoshi, Sugimachi, Keishi, Tanaka, Fumiaki, Suzuki, Hiromichi, Yamamoto, Ken, Ishii, Hideshi, Shimizu, Makiko, Yamazaki, Hiroshi, Yamazaki, Makoto, Tachimori, Yuji, Kajiyama, Yoshiaki, Natsugoe, Shoji, Fujita, Hiromasa, Mafune, Kenichi, Tanaka, Yoichi, Kelsell, David P, Scott, Claire A, Tsuji, Shoji, Yachida, Shinichi, Shibata, Tatsuhiro, Sugano, Sumio, Doki, Yuichiro, Akiyama, Tetsu, Aburatani, Hiroyuki, Ogawa, Seishi, Miyano, Satoru, Mori, Masaki, Mimori, Koshi

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Inherited and Somatic Defects in DDX41 in Myeloid Neoplasms von Polprasert, Chantana, Schulze, Isabell, Sekeres, Mikkael A, Makishima, Hideki, Przychodzen, Bartlomiej, Hosono, Naoko, Singh, Jarnail, Padgett, Richard A, Gu, Xiaorong, Phillips, James G, Clemente, Michael, Parker, Yvonne, Lindner, Daniel, Dienes, Brittney, Jankowsky, Eckhard, Saunthararajah, Yogen, Du, Yang, Oakley, Kevin, Nguyen, Nhu, Mukherjee, Sudipto, Pabst, Caroline, Godley, Lucy A, Churpek, Jane E, Pollyea, Daniel A, Krug, Utz, Berdel, Wolfgang E, Klein, Hans-Ulrich, Dugas, Martin, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Miyano, Satoru, Yoshida, Kenichi, Ogawa, Seishi, Müller-Tidow, Carsten, Maciejewski, Jaroslaw P

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A comprehensive characterization of cis -acting splicing-associated variants in human cancer von Shiraishi, Yuichi, Kataoka, Keisuke, Chiba, Kenichi, Okada, Ai, Kogure, Yasunori, Tanaka, Hiroko, Ogawa, Seishi, Miyano, Satoru

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Aberrant splicing of U12-type introns is the hallmark of ZRSR2 mutant myelodysplastic syndrome von Madan, Vikas, Kanojia, Deepika, Li, Jia, Okamoto, Ryoko, Sato-Otsubo, Aiko, Kohlmann, Alexander, Sanada, Masashi, Grossmann, Vera, Sundaresan, Janani, Shiraishi, Yuichi, Miyano, Satoru, Thol, Felicitas, Ganser, Arnold, Yang, Henry, Haferlach, Torsten, Ogawa, Seishi, Koeffler, H. Phillip

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Frequent genetic alterations in immune checkpoint–related genes in intravascular large B-cell lymphoma von Shimada, Kazuyuki, Yoshida, Kenichi, Suzuki, Yasuhiro, Iriyama, Chisako, Inoue, Yoshikage, Sanada, Masashi, Kataoka, Keisuke, Yuge, Masaaki, Takagi, Yusuke, Kusumoto, Shigeru, Masaki, Yasufumi, Ito, Takahiko, Inagaki, Yuichiro, Okamoto, Akinao, Kuwatsuka, Yachiyo, Nakatochi, Masahiro, Shimada, Satoko, Miyoshi, Hiroaki, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Miyano, Satoru, Shiozawa, Yusuke, Nannya, Yasuhito, Okabe, Asako, Kohno, Kei, Atsuta, Yoshiko, Ohshima, Koichi, Nakamura, Shigeo, Ogawa, Seishi, Tomita, Akihiro, Kiyoi, Hitoshi

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An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data von Shiraishi, Yuichi, Sato, Yusuke, Chiba, Kenichi, Okuno, Yusuke, Nagata, Yasunobu, Yoshida, Kenichi, Shiba, Norio, Hayashi, Yasuhide, Kume, Haruki, Homma, Yukio, Sanada, Masashi, Ogawa, Seishi, Miyano, Satoru

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Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms von Kon, Ayana, Shih, Lee-Yung, Minamino, Masashi, Sanada, Masashi, Shiraishi, Yuichi, Nagata, Yasunobu, Yoshida, Kenichi, Okuno, Yusuke, Bando, Masashige, Nakato, Ryuichiro, Ishikawa, Shumpei, Sato-Otsubo, Aiko, Nagae, Genta, Nishimoto, Aiko, Haferlach, Claudia, Nowak, Daniel, Sato, Yusuke, Alpermann, Tamara, Nagasaki, Masao, Shimamura, Teppei, Tanaka, Hiroko, Chiba, Kenichi, Yamamoto, Ryo, Yamaguchi, Tomoyuki, Otsu, Makoto, Obara, Naoshi, Sakata-Yanagimoto, Mamiko, Nakamaki, Tsuyoshi, Ishiyama, Ken, Nolte, Florian, Hofmann, Wolf-Karsten, Miyawaki, Shuichi, Chiba, Shigeru, Mori, Hiraku, Nakauchi, Hiromitsu, Koeffler, H Phillip, Aburatani, Hiroyuki, Haferlach, Torsten, Shirahige, Katsuhiko, Miyano, Satoru, Ogawa, Seishi

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Genetic and transcriptional landscape of plasma cells in POEMS syndrome von Nagao, Yuhei, Mimura, Naoya, Takeda, June, Yoshida, Kenichi, Shiozawa, Yusuke, Oshima, Motohiko, Aoyama, Kazumasa, Saraya, Atsunori, Koide, Shuhei, Rizq, Ola, Hasegawa, Yoshinori, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Nishijima, Dai, Isshiki, Yusuke, Kayamori, Kensuke, Kawajiri-Manako, Chika, Oshima-Hasegawa, Nagisa, Tsukamoto, Shokichi, Mitsukawa, Shio, Takeda, Yusuke, Ohwada, Chikako, Takeuchi, Masahiro, Iseki, Tohru, Misawa, Sonoko, Miyano, Satoru, Ohara, Osamu, Yokote, Koutaro, Sakaida, Emiko, Kuwabara, Satoshi, Sanada, Masashi, Iwama, Atsushi, Ogawa, Seishi, Nakaseko, Chiaki

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Clonal evolution in myelodysplastic syndromes von da Silva-Coelho, Pedro, Kroeze, Leonie I., Yoshida, Kenichi, Koorenhof-Scheele, Theresia N., Knops, Ruth, van de Locht, Louis T., de Graaf, Aniek O., Massop, Marion, Sandmann, Sarah, Dugas, Martin, Stevens-Kroef, Marian J., Cermak, Jaroslav, Shiraishi, Yuichi, Chiba, Kenichi, Tanaka, Hiroko, Miyano, Satoru, de Witte, Theo, Blijlevens, Nicole M. A., Muus, Petra, Huls, Gerwin, van der Reijden, Bert A., Ogawa, Seishi, Jansen, Joop H.

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Whole-genome mutational landscape of liver cancers displaying biliary phenotype reveals hepatitis impact and molecular diversity von Fujimoto, Akihiro, Furuta, Mayuko, Shiraishi, Yuichi, Gotoh, Kunihito, Kawakami, Yoshiiku, Arihiro, Koji, Nakamura, Toru, Ueno, Masaki, Ariizumi, Shun-ichi, Hai Nguyen, Ha, Shigemizu, Daichi, Abe, Tetsuo, Boroevich, Keith A., Nakano, Kaoru, Sasaki, Aya, Kitada, Rina, Maejima, Kazihiro, Yamamoto, Yujiro, Tanaka, Hiroko, Shibuya, Tetsuo, Shibata, Tatsuhiro, Ojima, Hidenori, Shimada, Kazuaki, Hayami, Shinya, Shigekawa, Yoshinobu, Aikata, Hiroshi, Ohdan, Hideki, Marubashi, Shigeru, Yamada, Terumasa, Kubo, Michiaki, Hirano, Satoshi, Ishikawa, Osamu, Yamamoto, Masakazu, Yamaue, Hiroki, Chayama, Kazuaki, Miyano, Satoru, Tsunoda, Tatsuhiko, Nakagawa, Hidewaki

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