Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information von Ohyanagi, Hajime, Tanaka, Tsuyoshi, Sakai, Hiroaki, Shigemoto, Yasumasa, Yamaguchi, Kaori, Habara, Takuya, Fujii, Yasuyuki, Antonio, Baltazar A, Nagamura, Yoshiaki, Imanishi, Tadashi, Ikeo, Kazuho, Itoh, Takeshi, Gojobori, Takashi, Sasaki, Takuji

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Web API for biology with a workflow navigation system von Kwon, Yeondae, Shigemoto, Yasumasa, Kuwana, Yoshikazu, Sugawara, Hideaki

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Adaptive divergence with gene flow in incipient speciation of Miscanthus floridulus/sinensis complex (Poaceae) von Huang, Chao‐Li, Ho, Chuan‐Wen, Chiang, Yu‐Chung, Shigemoto, Yasumasa, Hsu, Tsai‐Wen, Hwang, Chi‐Chuan, Ge, Xue‐Jun, Chen, Charles, Wu, Tai‐Han, Chou, Chang‐Hung, Huang, Hao‐Jen, Gojobori, Takashi, Osada, Naoki, Chiang, Tzen‐Yuh

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Adaptive divergence with gene flow in incipient speciation of M iscanthus floridulus / sinensis complex ( P oaceae) von Huang, Chao‐Li, Ho, Chuan‐Wen, Chiang, Yu‐Chung, Shigemoto, Yasumasa, Hsu, Tsai‐Wen, Hwang, Chi‐Chuan, Ge, Xue‐Jun, Chen, Charles, Wu, Tai‐Han, Chou, Chang‐Hung, Huang, Hao‐Jen, Gojobori, Takashi, Osada, Naoki, Chiang, Tzen‐Yuh

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Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes von Hirahata, Masaki, Abe, Takashi, Tanaka, Naoto, Kuwana, Yoshikazu, Shigemoto, Yasumasa, Miyazaki, Satoru, Suzuki, Yoshiyuki, Sugawara, Hideaki

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Splicing Profile Based Protein Categorization between Human and Mouse Genomes by Use of the DDBJ Web Services von Västermark, Åke, Shigemoto, Yasumasa, Abe, Takashi, Sugawara, Hideaki

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Enhancement of the SOAP Server in DDBJ Web Services to Process Tsunami of Biological Data von Shigemoto, Yasumasa, Yamaguchi, Masahito, Miyazaki, Satoru, Sugawara, Hideaki

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Implementation of linked data in the life sciences at BioHackathon 2011 von Aoki-Kinoshita, Kiyoko F, Kinjo, Akira R, Morita, Mizuki, Igarashi, Yoshinobu, Chen, Yi-An, Shigemoto, Yasumasa, Fujisawa, Takatomo, Akune, Yukie, Katoda, Takeo, Kokubu, Anna, Mori, Takaaki, Nakao, Mitsuteru, Kawashima, Shuichi, Okamoto, Shinobu, Katayama, Toshiaki, Ogishima, Soichi

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A Prototype of PubMed Central Japan von Sugawara, Hideaki, Gojobori, Takashi, Konno, Takeshi, Shigemoto, Yasumasa, Yamaguchi, Masahito

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Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes von Hirahata, Masaki, Abe, Takashi, Tanaka, Naoto, Kuwana, Yoshikazu, Shigemoto, Yasumasa, Miyazaki, Satoru, Suzuki, Yoshiyuki, Sugawara, Hideaki

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The phenotype and genotype experiment object model (PaGE-OM): a robust data structure for information related to DNA variation von Brookes, Anthony J., Lehvaslaiho, Heikki, Muilu, Juha, Shigemoto, Yasumasa, Oroguchi, Takashige, Tomiki, Takeshi, Mukaiyama, Atsuhiro, Konagaya, Akihiko, Kojima, Toshio, Inoue, Ituro, Kuroda, Masako, Mizushima, Hiroshi, Thorisson, Gudmundur A., Dash, Debasis, Rajeevan, Haseena, Darlison, Matthew W., Woon, Mark, Fredman, David, Smith, Albert V., Senger, Martin, Naito, Kimitoshi, Sugawara, Hideaki

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The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications von Katayama, Toshiaki, Wilkinson, Mark D, Vos, Rutger, Kawashima, Takeshi, Kawashima, Shuichi, Nakao, Mitsuteru, Yamamoto, Yasunori, Chun, Hong-Woo, Yamaguchi, Atsuko, Kawano, Shin, Aerts, Jan, Aoki-Kinoshita, Kiyoko F, Arakawa, Kazuharu, Aranda, Bruno, Bonnal, Raoul Jp, Fernández, José M, Fujisawa, Takatomo, Gordon, Paul Mk, Goto, Naohisa, Haider, Syed, Harris, Todd, Hatakeyama, Takashi, Ho, Isaac, Itoh, Masumi, Kasprzyk, Arek, Kido, Nobuhiro, Kim, Young-Joo, Kinjo, Akira R, Konishi, Fumikazu, Kovarskaya, Yulia, von Kuster, Greg, Labarga, Alberto, Limviphuvadh, Vachiranee, McCarthy, Luke, Nakamura, Yasukazu, Nam, Yunsun, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Oinn, Tom, Okamoto, Shinobu, Okuda, Shujiro, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Putnam, Nicholas, Senger, Martin, Severin, Jessica, Shigemoto, Yasumasa, Sugawara, Hideaki, Taylor, James, Trelles, Oswaldo, Yamasaki, Chisato, Yamashita, Riu, Satoh, Noriyuki, Takagi, Toshihisa

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The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium von Katayama, Toshiaki, Arakawa, Kazuharu, Nakao, Mitsuteru, Ono, Keiichiro, Aoki-Kinoshita, Kiyoko F, Yamamoto, Yasunori, Yamaguchi, Atsuko, Kawashima, Shuichi, Chun, Hong-Woo, Aerts, Jan, Aranda, Bruno, Barboza, Lord Hendrix, Bonnal, Raoul Jp, Bruskiewich, Richard, Bryne, Jan C, Fernández, José M, Funahashi, Akira, Gordon, Paul Mk, Goto, Naohisa, Groscurth, Andreas, Gutteridge, Alex, Holland, Richard, Kano, Yoshinobu, Kawas, Edward A, Kerhornou, Arnaud, Kibukawa, Eri, Kinjo, Akira R, Kuhn, Michael, Lapp, Hilmar, Lehvaslaiho, Heikki, Nakamura, Hiroyuki, Nakamura, Yasukazu, Nishizawa, Tatsuya, Nobata, Chikashi, Noguchi, Tamotsu, Oinn, Thomas M, Okamoto, Shinobu, Owen, Stuart, Pafilis, Evangelos, Pocock, Matthew, Prins, Pjotr, Ranzinger, René, Reisinger, Florian, Salwinski, Lukasz, Schreiber, Mark, Senger, Martin, Shigemoto, Yasumasa, Standley, Daron M, Sugawara, Hideaki, Tashiro, Toshiyuki, Trelles, Oswaldo, Vos, Rutger A, Wilkinson, Mark D, York, William, Zmasek, Christian M, Asai, Kiyoshi, Takagi, Toshihisa

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DATABASE ANALYSIS PROGRAM, DATABASE ANALYSIS METHOD, AND DATABASE ANALYSIS DEVICE von OTSUBO TOSHIYUKI, HAMANAKA TAKATOSHI, SHIGEMOTO YASUMASA

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Web API for Biology von SHIGEMOTO, Yasumasa, KUWANA, Yoshikazu, KWON, Yeondae, SUGAWARA, Hideaki

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Schema of Genome Information Broker for Viruses (GIB-V) von Hirahata, Masaki, Abe, Takashi, Tanaka, Naoto, Kuwana, Yoshikazu, Shigemoto, Yasumasa, Miyazaki, Satoru, Suzuki, Yoshiyuki, Sugawara, Hideaki

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Example of BLAST search results von Hirahata, Masaki, Abe, Takashi, Tanaka, Naoto, Kuwana, Yoshikazu, Shigemoto, Yasumasa, Miyazaki, Satoru, Suzuki, Yoshiyuki, Sugawara, Hideaki

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The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies von Katayama, Toshiaki, Wilkinson, Mark D, Micklem, Gos, Kawashima, Shuichi, Yamaguchi, Atsuko, Nakao, Mitsuteru, Yamamoto, Yasunori, Okamoto, Shinobu, Oouchida, Kenta, Chun, Hong-Woo, Aerts, Jan, Afzal, Hammad, Antezana, Erick, Arakawa, Kazuharu, Aranda, Bruno, Belleau, Francois, Bolleman, Jerven, Bonnal, Raoul Jp, Chapman, Brad, Cock, Peter Ja, Eriksson, Tore, Gordon, Paul Mk, Goto, Naohisa, Hayashi, Kazuhiro, Horn, Heiko, Ishiwata, Ryosuke, Kaminuma, Eli, Kasprzyk, Arek, Kawaji, Hideya, Kido, Nobuhiro, Kim, Young Joo, Kinjo, Akira R, Konishi, Fumikazu, Kwon, Kyung-Hoon, Labarga, Alberto, Lamprecht, Anna-Lena, Lin, Yu, Lindenbaum, Pierre, McCarthy, Luke, Morita, Hideyuki, Murakami, Katsuhiko, Nagao, Koji, Nishida, Kozo, Nishimura, Kunihiro, Nishizawa, Tatsuya, Ogishima, Soichi, Ono, Keiichiro, Oshita, Kazuki, Park, Keun-Joon, Prins, Pjotr, Saito, Taro L, Samwald, Matthias, Satagopam, Venkata P, Shigemoto, Yasumasa, Smith, Richard, Splendiani, Andrea, Sugawara, Hideaki, Taylor, James, Vos, Rutger A, Withers, David, Yamasaki, Chisato, Zmasek, Christian M, Kawamoto, Shoko, Okubo, Kosaku, Asai, Kiyoshi, Takagi, Toshihisa

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Overview of the hub for rice genome information von Ohyanagi, Hajime, Tanaka, Tsuyoshi, Sakai, Hiroaki, Shigemoto, Yasumasa, Yamaguchi, Kaori, Habara, Takuya, Fujii, Yasuyuki, Antonio, Baltazar A., Nagamura, Yoshiaki, Imanishi, Tadashi, Ikeo, Kazuho, Itoh, Takeshi, Gojobori, Takashi, Sasaki, Takuji

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Flowchart of RAP-DB browsing von Ohyanagi, Hajime, Tanaka, Tsuyoshi, Sakai, Hiroaki, Shigemoto, Yasumasa, Yamaguchi, Kaori, Habara, Takuya, Fujii, Yasuyuki, Antonio, Baltazar A., Nagamura, Yoshiaki, Imanishi, Tadashi, Ikeo, Kazuho, Itoh, Takeshi, Gojobori, Takashi, Sasaki, Takuji

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