ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference von Steenwyk, Jacob L, Buida, 3rd, Thomas J, Li, Yuanning, Shen, Xing-Xing, Rokas, Antonis

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Contentious relationships in phylogenomic studies can be driven by a handful of genes von Shen, Xing-Xing, Hittinger, Chris Todd, Rokas, Antonis

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PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data von Steenwyk, Jacob L, Buida, Thomas J, Labella, Abigail L, Li, Yuanning, Shen, Xing-Xing, Rokas, Antonis

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Rooting the Animal Tree of Life von Li, Yuanning, Shen, Xing-Xing, Evans, Benjamin, Dunn, Casey W, Rokas, Antonis

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Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets von Zhou, Xiaofan, Shen, Xing-Xing, Hittinger, Chris Todd, Rokas, Antonis

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Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts von Steenwyk, Jacob L, Opulente, Dana A, Kominek, Jacek, Shen, Xing-Xing, Zhou, Xiaofan, Labella, Abigail L, Bradley, Noah P, Eichman, Brandt F, Čadež, Neža, Libkind, Diego, DeVirgilio, Jeremy, Hulfachor, Amanda Beth, Kurtzman, Cletus P, Hittinger, Chris Todd, Rokas, Antonis

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An investigation of irreproducibility in maximum likelihood phylogenetic inference von Shen, Xing-Xing, Li, Yuanning, Hittinger, Chris Todd, Chen, Xue-xin, Rokas, Antonis

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A General Approach to Design Dual Ratiometric Fluorescent and Photoacoustic Probes for Quantitatively Visualizing Tumor Hypoxia Levels In Vivo von Zhang, Shuping, Chen, Hua, Wang, Liping, Qin, Xue, Jiang, Bang‐Ping, Ji, Shi‐Chen, Shen, Xing‐Can, Liang, Hong

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The development of three long universal nuclear protein-coding locus markers and their application to osteichthyan phylogenetics with nested PCR von Shen, Xing-Xing, Liang, Dan, Zhang, Peng

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Recent Advances in Carbon Nanomaterials for Cancer Phototherapy von Jiang, Bang‐Ping, Zhou, Bo, Lin, Zhaoxing, Liang, Hong, Shen, Xing‐Can

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OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees von Steenwyk, Jacob L, Goltz, Dayna C, Buida, Thomas J, Li, Yuanning, Shen, Xing-Xing, Rokas, Antonis

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PhyloFisher: A phylogenomic package for resolving eukaryotic relationships von Tice, Alexander K, Zihala, David, Pánek, Tomás, Jones, Robert E, Salomaki, Eric D, Nenarokov, Serafim, Burki, Fabien, Eliás, Marek, Eme, Laura, Roger, Andrew J, Rokas, Antonis, Shen, Xing-Xing, Strassert, Jürgen F. H, Kolísko, Martin, Brown, Matthew W

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HGT is widespread in insects and contributes to male courtship in lepidopterans von Li, Yang, Liu, Zhiguo, Liu, Chao, Shi, Zheyi, Pang, Lan, Chen, Chuzhen, Chen, Yun, Pan, Ronghui, Zhou, Wenwu, Chen, Xue-xin, Rokas, Antonis, Huang, Jianhua, Shen, Xing-Xing

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Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum von Shen, Xing-Xing, Opulente, Dana A., Kominek, Jacek, Zhou, Xiaofan, Steenwyk, Jacob L., Buh, Kelly V., Haase, Max A.B., Wisecaver, Jennifer H., Wang, Mingshuang, Doering, Drew T., Boudouris, James T., Schneider, Rachel M., Langdon, Quinn K., Ohkuma, Moriya, Endoh, Rikiya, Takashima, Masako, Manabe, Ri-ichiroh, Čadež, Neža, Libkind, Diego, Rosa, Carlos A., DeVirgilio, Jeremy, Hulfachor, Amanda Beth, Groenewald, Marizeth, Kurtzman, Cletus P., Hittinger, Chris Todd, Rokas, Antonis

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Incongruence in the phylogenomics era von Steenwyk, Jacob L., Li, Yuanning, Zhou, Xiaofan, Shen, Xing-Xing, Rokas, Antonis

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Exosomes Derived from Mesenchymal Stem Cells Rescue Myocardial Ischaemia/Reperfusion Injury by Inducing Cardiomyocyte Autophagy Via AMPK and Akt Pathways von Liu, Liang, Jin, Xian, Hu, Cui-Fen, Li, Rong, Zhou, Zhong’e, Shen, Cheng-Xing

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Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data von Shen, Xing-Xing, Zhou, Xiaofan, Kominek, Jacek, Kurtzman, Cletus P, Hittinger, Chris Todd, Rokas, Antonis

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Evolutionary instability of CUG-Leu in the genetic code of budding yeasts von Krassowski, Tadeusz, Coughlan, Aisling Y., Shen, Xing-Xing, Zhou, Xiaofan, Kominek, Jacek, Opulente, Dana A., Riley, Robert, Grigoriev, Igor V., Maheshwari, Nikunj, Shields, Denis C., Kurtzman, Cletus P., Hittinger, Chris Todd, Rokas, Antonis, Wolfe, Kenneth H.

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How has horizontal gene transfer shaped the evolution of insect genomes? von Liu, Chao, Li, Yang, Chen, Yun, Chen, Xue‐xin, Huang, Jianhua, Rokas, Antonis, Shen, Xing‐Xing

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Surface‐Enhanced Raman Probes Based on Gold Nanomaterials for in vivo Diagnosis and Imaging von Wen, Changchun, Wang, Liping, Liu, Li, Shen, Xing‐Can, Chen, Hua

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