New Rapid Scheme for Distinguishing the Subspecies of the Mycobacterium abscessus Group and Identifying Mycobacterium massiliense Isolates with Inducible Clarithromycin Resistance von Shallom, Shamira J, Gardina, Paul J, Myers, Timothy G, Sebastian, Yinong, Conville, Patricia, Calhoun, Leslie B, Tettelin, Hervé, Olivier, Kenneth N, Uzel, Gulbu, Sampaio, Elizabeth P, Holland, Steven M, Zelazny, Adrian M

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Clonal Diversification and Changes in Lipid Traits and Colony Morphology in Mycobacterium abscessus Clinical Isolates von Park, In Kwon, Hsu, Amy P, Tettelin, Hervé, Shallom, Shamira J, Drake, Steven K, Ding, Li, Wu, Un-In, Adamo, Nick, Prevots, D Rebecca, Olivier, Kenneth N, Holland, Steven M, Sampaio, Elizabeth P, Zelazny, Adrian M

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Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle von WATTAM, Alice R, WILLIAMS, Kelly P, YOO, H, FICHT, T. A, TSOLIS, R. M, MUNK, C, TAPIA, R, HAN, C. S, DETTER, J. C, BRUCE, D, BRETTIN, T. S, SOBRAL, Bruno W, SNYDER, Eric E, BOYLE, Stephen M, SETUBAL, Joao C, ALMEIDA, Nalvo F, SHUKLA, Maulik, DICKERMAN, A. W, CRASTA, O. R, KENYON, R, LU, J, SHALLOM, J. M

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Genome sequence of the human malaria parasite Plasmodium falciparum von Gardner, Malcolm J., Hall, Neil, Fung, Eula, White, Owen, Berriman, Matthew, Hyman, Richard W., Carlton, Jane M., Pain, Arnab, Nelson, Karen E., Bowman, Sharen, Paulsen, Ian T., James, Keith, Eisen, Jonathan A., Rutherford, Kim, Salzberg, Steven L., Craig, Alister, Kyes, Sue, Chan, Man-Suen, Nene, Vishvanath, Shallom, Shamira J., Suh, Bernard, Peterson, Jeremy, Angiuoli, Sam, Pertea, Mihaela, Allen, Jonathan, Selengut, Jeremy, Haft, Daniel, Mather, Michael W., Vaidya, Akhil B., Martin, David M. A., Fairlamb, Alan H., Fraunholz, Martin J., Roos, David S., Ralph, Stuart A., McFadden, Geoffrey I., Cummings, Leda M., Subramanian, G. Mani, Mungall, Chris, Venter, J. Craig, Carucci, Daniel J., Hoffman, Stephen L., Newbold, Chris, Davis, Ronald W., Fraser, Claire M., Barrell, Bart

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Evolution of Mycobacterium abscessus in the human lung: Cumulative mutations and genomic rearrangement of porin genes in patient isolates von Shallom, Shamira J., Tettelin, Hervé, Chandrasekaran, Prabha, Park, In Kwon, Agrawal, Sonia, Arora, Kriti, Sadzewicz, Lisa, Milstone, Aaron M., Aitken, Moira L., Brown-Elliott, Barbara A., Wallace, Richard J., Sampaio, Elizabeth P., Niederweis, Michael, Olivier, Kenneth N., Holland, Steven M., Zelazny, Adrian M.

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Detection of Mixed Populations of Clarithromycin-Susceptible and -Resistant Mycobacterium abscessus Strains von Shallom, Shamira J, Zelazny, Adrian M

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Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii von Carlton, Jane M., Angiuoli, Samuel V., Suh, Bernard B., Kooij, Taco W., Pertea, Mihaela, Silva, Joana C., Ermolaeva, Maria D., Allen, Jonathan E., Selengut, Jeremy D., Koo, Hean L., Peterson, Jeremy D., Pop, Mihai, Kosack, Daniel S., Shumway, Martin F., Bidwell, Shelby L., Shallom, Shamira J., van Aken, Susan E., Riedmuller, Steven B., Feldblyum, Tamara V., Cho, Jennifer K., Quackenbush, John, Sedegah, Martha, Shoaibi, Azadeh, Cummings, Leda M., Florens, Laurence, Yates, John R., Raine, J. Dale, Sinden, Robert E., Harris, Michael A., Cunningham, Deirdre A., Preiser, Peter R., Bergman, Lawrence W., Vaidya, Akhil B., van Lin, Leo H., Janse, Chris J., Waters, Andrew P., Smith, Hamilton O., White, Owen R., Salzberg, Steven L., Venter, J. Craig, Fraser, Claire M., Hoffman, Stephen L., Gardner, Malcolm J., Carucci, Daniel J.

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Genome Sequence of Theileria parva, a Bovine Pathogen That Transforms Lymphocytes von Gardner, Malcolm J., Bishop, Richard, Shah, Trushar, de Villiers, Etienne P., Carlton, Jane M., Hall, Neil, Ren, Qinghu, Paulsen, Ian T., Pain, Arnab, Berriman, Matthew, Robert J. M. Wilson, Sato, Shigeharu, Ralph, Stuart A., Mann, David J., Xiong, Zikai, Shallom, Shamira J., Weidman, Janice, Jiang, Lingxia, Lynn, Jeffery, Weaver, Bruce, Shoaibi, Azadeh, Domingo, Alexander R., Wasawo, Delia, Crabtree, Jonathan, Wortman, Jennifer R., Haas, Brian, Angiuoli, Samuel V., Creasy, Todd H., Lu, Charles, Suh, Bernard, Silva, Joana C., Utterback, Teresa R., Feldblyum, Tamara V., Pertea, Mihaela, Allen, Jonathan, Nierman, William C., Evans L. N. Taracha, Salzberg, Steven L., White, Owen R., Fitzhugh, Henry A., Morzaria, Subhash, Venter, J. Craig, Fraser, Claire M., Nene, Vishvanath

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Tissue specific diversification, virulence and immune response to Mycobacterium bovis BCG in a patient with an IFN-γ R1 deficiency von Korol, Cecilia B., Shallom, Shamira J., Arora, Kriti, Boshoff, Helena I., Freeman, Alexandra F., King, Alejandra, Agrawal, Sonia, Daugherty, Sean C., Jancel, Timothy, Kabat, Juraj, Ganesan, Sundar, Torrero, Marina N., Sampaio, Elizabeth P., Barry, Clifton, Holland, Steve M, Tettelin, Hervé, Rosenzweig, Sergio D, Zelazny, Adrian M.

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Disulfiram Is Effective against Drug-Resistant Mycobacterium abscessus in a Zebrafish Embryo Infection Model von Winters, Carlynn G, Basnet, Ram M, Faasuamalie, Paige E, Shallom, Shamira J, Zelazny, Adrian M, Gupta, Shashank, Olivier, Kenneth N

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PATRIC: The VBI PathoSystems Resource Integration Center von Snyder, E.E, Kampanya, N, Lu, J, Nordberg, E.K, Karur, H.R, Shukla, M, Soneja, J, Tian, Y, Xue, T, Yoo, H, Zhang, F, Dharmanolla, C, Dongre, N.V, Gillespie, J.J, Hamelius, J, Hance, M, Huntington, K.I, Jukneliene, D, Koziski, J, Mackasmiel, L, Mane, S.P, Nguyen, V, Purkayastha, A, Shallom, J, Yu, G, Guo, Y, Gabbard, J, Hix, D, Azad, A.F, Baker, S.C, Boyle, S.M, Khudyakov, Y, Meng, X.J, Rupprecht, C, Vinje, J, Crasta, O.R, Czar, M.J, Dickerman, A, Eckart, J.D, Kenyon, R, Will, R, Setubal, J.C, Sobral, B.W.S

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New Real-Time PCR Assays for Detection of Inducible and Acquired Clarithromycin Resistance in the Mycobacterium abscessus Group von Shallom, Shamira J, Moura, Natalia S, Olivier, Kenneth N, Sampaio, Elizabeth P, Holland, Steven M, Zelazny, Adrian M

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Admission Screening for Candida auris Among High-Risk Patient Populations von Spalding, Christine D., Adrian, Zelazny, Kenosky, Christina M., Shallom, Shamira J., Syedmoussavi, Seyedmojtaba, Segre, Julia A., Palmore, Tara

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A species independent universal bio-detection microarray for pathogen forensics and phylogenetic classification of unknown microorganisms von Shallom, Shamira J, Weeks, Jenni N, Galindo, Cristi L, McIver, Lauren, Sun, Zhaohui, McCormick, John, Adams, L Garry, Garner, Harold R

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Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14 von Gardner, Malcolm J., Shallom, Shamira J., Carlton, Jane M., Salzberg, Steven L., Nene, Vishvanath, Shoaibi, Azadeh, Ciecko, Anne, Lynn, Jeffery, Rizzo, Michael, Weaver, Bruce, Jarrahi, Behnam, Brenner, Michael, Parvizi, Babak, Tallon, Luke, Moazzez, Azita, Granger, David, Fujii, Claire, Hansen, Cheryl, Pederson, James, Feldblyum, Tamara, Peterson, Jeremy, Suh, Bernard, Angiuoli, Sam, Pertea, Mihaela, Allen, Jonathan, Selengut, Jeremy, White, Owen, Cummings, Leda M., Smith, Hamilton O., Adams, Mark D., Venter, J. Craig, Carucci, Daniel J., Hoffman, Stephen L., Fraser, Claire M.

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Patients with Idiopathic Pulmonary Nontuberculous Mycobacterial Disease Have Normal Th1/Th2 Cytokine Responses but Diminished Th17 Cytokine and Enhanced Granulocyte-Macrophage Colo... von Wu, Un-In, Olivier, Kenneth N, Kuhns, Douglas B, Fink, Danielle L, Sampaio, Elizabeth P, Zelazny, Adrian M, Shallom, Shamira J, Marciano, Beatriz E, Lionakis, Michail S, Holland, Steven M

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Comparison of genome diversity of Brucella spp. field isolates using Universal Bio-signature Detection Array and whole genome sequencing reveals limitations of current diagnostic m... von Shallom, Shamira J., Tae, Hongseok, Sarmento, Luciana, Preston, Dale, McIver, Lauren, Franck, Christopher, Dickerman, Allan, Adams, L. Garry, Garner, Harold R.

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Genome of the African Trypanosome Trypanosoma brucei von Berriman, Matthew, Ghedin, Elodie, Hertz-Fowler, Christiane, Blandin, Gae̊lle, Renauld, Hubert, Bartholomeu, Daniella C, Lennard, Nicola J, Caler, Elisabet, Hamlin, Nancy E, Haas, Brian, Böhme, Ulrike, Hannick, Linda, Aslett, Martin A, Shallom, Joshua, Marcello, Lucio, Hou, Lihua, Wickstead, Bill, Alsmark, U. Cecilia M, Arrowsmith, Claire, Atkin, Rebecca J, Barron, Andrew J, Bringaud, Frederic, Brooks, Karen, Carrington, Mark, Cherevach, Inna, Chillingworth, Tracey-Jane, Churcher, Carol, Clark, Louise N, Corton, Craig H, Cronin, Ann, Davies, Rob M, Djikeng, Appolinaire, Feldblyum, Tamara, Field, Mark C, Fraser, Audrey, Goodhead, Ian, Hance, Zahra, Harper, David, Harris, Barbara R, Hauser, Heidi, Hostetler, Jessica, Ivens, Al, Jagels, Kay, Johnson, David, Johnson, Justin, Jones, Kristine, Kerhornou, Arnaud X, Koo, Hean, Larke, Natasha, Landfear, Scott, Larkin, Christopher, Leech, Vanessa, Line, Alexandra, Lord, Angela, MacLeod, Annette, Mooney, Paul J, Moule, Sharon, Martin, David M. A, Morgan, Gareth W, Mungall, Karen, Ormond, Doug, Pai, Grace, Peacock, Chris S, Peterson, Jeremy, Quail, Michael A, Rabbinowitsch, Ester, Rajandream, Marie-Adele, Reitter, Chris, Salzberg, Steven L, Sanders, Mandy, Schobel, Seth, Sharp, Sarah, Simmonds, Mark, Simpson, Anjana J, Tallon, Luke, Turner, C. Michael R, Tait, Andrew, Tivey, Adrian R, Van Aken, Susan, Walker, Danielle, Wanless, David, Wang, Shiliang, White, Brian, White, Owen, Whitehead, Sally, Woodward, John, Wortman, Jennifer, Adams, Mark D, Embley, T. Martin, Gull, Keith, Ullu, Elisabetta, Barry, J. David, Fairlamb, Alan H, Opperdoes, Fred, Barrell, Barclay G, Donelson, John E, Hall, Neil, Fraser, Claire M, Melville, Sara E, El-Sayed, Najib M

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PATRIC: The VBI PathoSystems Resource Integration Center von Snyder, E E, Kampanya, N, J. Lu, Nordberg, E K, Karur, H R, Shukla, M, Soneja, J, Tian, Y, Xue, T, Yoo, H, Zhang, F, Dharmanolla, C, Dongre, N V, Gillespie, J J, Hamelius, J, Hance, M, Huntington, K I, Jukneliene, D, Koziski, J, Mackasmiel, L

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D16 EPIDEMIOLOGY AND PATHOGENESIS OF NONTUBERCULOUS MYCOBACTERIA INFECTIONS: Pulmonary Nontuberculous Mycobacterial Patients Have Normal Intracellular Th1, Th2 And Treg Cytokines von Wu, U-I, Olivier, K N, Sampaio, E P, Zelazny, A M, Lionakis, M S, Shallom, S J, Holland, S M

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