Defining human ERAD networks through an integrative mapping strategy von Christianson, John C., Olzmann, James A., Shaler, Thomas A., Sowa, Mathew E., Bennett, Eric J., Richter, Caleb M., Tyler, Ryan E., Greenblatt, Ethan J., Wade Harper, J., Kopito, Ron R.

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Redundant and Antagonistic Roles of XTP3B and OS9 in Decoding Glycan and Non-glycan Degrons in ER-Associated Degradation von van der Goot, Annemieke T., Pearce, Margaret M.P., Leto, Dara E., Shaler, Thomas A., Kopito, Ron R.

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Indirect inhibition of 26S proteasome activity in a cellular model of Huntington's disease von Hipp, Mark S, Patel, Chetan N, Bersuker, Kirill, Riley, Brigit E, Kaiser, Stephen E, Shaler, Thomas A, Brandeis, Michael, Kopito, Ron R

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Global changes to the ubiquitin system in Huntington's disease von Bennett, Eric J., Shaler, Thomas A., Woodman, Ben, Ryu, Kwon-Yul, Zaitseva, Tatiana S., Becker, Christopher H., Bates, Gillian P., Schulman, Howard, Kopito, Ron R.

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Unassembled CD147 is an endogenous endoplasmic reticulum-associated degradation substrate von Tyler, Ryan E, Pearce, Margaret M P, Shaler, Thomas A, Olzmann, James A, Greenblatt, Ethan J, Kopito, Ron R

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ALIX Is a Lys63-Specific Polyubiquitin Binding Protein that Functions in Retrovirus Budding von Dowlatshahi, Dara P., Sandrin, Virginie, Vivona, Sandro, Shaler, Thomas A., Kaiser, Stephen E., Melandri, Francesco, Sundquist, Wesley I., Kopito, Ron R.

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Ubiquitin accumulation in autophagy-deficient mice is dependent on the Nrf2-mediated stress response pathway: a potential role for protein aggregation in autophagic substrate selec... von Riley, Brigit E, Kaiser, Stephen E, Shaler, Thomas A, Ng, Aylwin C.Y, Hara, Taichi, Hipp, Mark S, Lage, Kasper, Xavier, Ramnik J, Ryu, Kwon-Yul, Taguchi, Keiko, Yamamoto, Masayuki, Tanaka, Keiji, Mizushima, Noboru, Komatsu, Masaaki, Kopito, Ron R

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Quantification of Proteins and Metabolites by Mass Spectrometry without Isotopic Labeling or Spiked Standards von Wang, Weixun, Zhou, Haihong, Lin, Hua, Roy, Sushmita, Shaler, Thomas A, Hill, Lander R, Norton, Scott, Kumar, Praveen, Anderle, Markus, Becker, Christopher H

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Identification and Relative Quantitation of Protein Mixtures by Enzymatic Digestion Followed by Capillary Reversed-Phase Liquid Chromatography−Tandem Mass Spectrometry von Bondarenko, Pavel V, Chelius, Dirk, Shaler, Thomas A

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Quantification of Intermediate-Abundance Proteins in Serum by Multiple Reaction Monitoring Mass Spectrometry in a Single-Quadrupole Ion Trap von Lin, Shanhua, Shaler, Thomas A, Becker, Christopher H

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USP8 regulates mitophagy by removing K6-linked ubiquitin conjugates from parkin von Durcan, Thomas M, Tang, Matthew Y, Pérusse, Joëlle R, Dashti, Eman A, Aguileta, Miguel A, McLelland, Gian-Luca, Gros, Priti, Shaler, Thomas A, Faubert, Denis, Coulombe, Benoit, Fon, Edward A

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OS-9 and GRP94 deliver mutant α1-antitrypsin to the Hrd1–SEL1L ubiquitin ligase complex for ERAD von Christianson, John C., Shaler, Thomas A., Tyler, Ryan E., Kopito, Ron R.

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Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin pools von Kaiser, Stephen E, Riley, Brigit E, Shaler, Thomas A, Trevino, R Sean, Becker, Christopher H, Schulman, Howard, Kopito, Ron R

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Characterization of protein complexes of the endoplasmic reticulum-associated degradation E3 ubiquitin ligase Hrd1 von Hwang, Jiwon, Walczak, Christopher P., Shaler, Thomas A., Olzmann, James A., Zhang, Lichao, Elias, Joshua E., Kopito, Ron R.

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Time-of-Flight Mass Spectrometry Of Underivatized Single-Stranded DNA Oligomers by Matrix-Assisted Laser Desorption von Wu, Kuang Jen, Shaler, Thomas A, Becker, Christopher H

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Mitogen-activated protein kinase (MAPK/ERK) regulates adenomatous polyposis coli during growth-factor-induced cell extension von Caro-Gonzalez, Hector Y, Nejsum, Lene N, Siemers, Kathleen A, Shaler, Thomas A, Nelson, W James, Barth, Angela I M

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Capture of Peptides with N-Terminal Serine and Threonine:  A Sequence-Specific Chemical Method for Peptide Mixture Simplification von Chelius, Dirk, Shaler, Thomas A

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Isomerization and Autolysis at Specific Amino Acid Residues of the Tau Protein and its Relations to Alzheimer's Disease von Lu, Madeleine, Shaler, Thomas A.

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Effect of Impurities on the Matrix-Assisted Laser Desorption Mass Spectra of Single-Stranded Oligodeoxynucleotides von Shaler, Thomas A, Wickham, Juanita N, Sannes, Kristin A, Wu, Kuang Jen, Becker, Christopher H

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Competing 1,3- and 1,2-Hydrogen Shifts in Gaseous Fluoropropyl Cations von Shaler, Thomas A, Borchardt, Dan, Morton, Thomas Hellman

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