MaizeGDB 2018: the maize multi-genome genetics and genomics database von Portwood, John L, Woodhouse, Margaret R, Cannon, Ethalinda K, Gardiner, Jack M, Harper, Lisa C, Schaeffer, Mary L, Walsh, Jesse R, Sen, Taner Z, Cho, Kyoung Tak, Schott, David A, Braun, Bremen L, Dietze, Miranda, Dunfee, Brittney, Elsik, Christine G, Manchanda, Nancy, Coe, Ed, Sachs, Marty, Stinard, Philip, Tolbert, Josh, Zimmerman, Shane, Andorf, Carson M

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G4Boost: a machine learning-based tool for quadruplex identification and stability prediction von Cagirici, H. Busra, Budak, Hikmet, Sen, Taner Z

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Co-expression pan-network reveals genes involved in complex traits within maize pan-genome von Cagirici, H Busra, Andorf, Carson M, Sen, Taner Z

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JBrowse Connect: A server API to connect JBrowse instances and users von Yao, Eric, Buels, Robert, Stein, Lincoln, Sen, Taner Z., Holmes, Ian

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Genome-wide discovery of G-quadruplexes in barley von Cagirici, H. Busra, Budak, Hikmet, Sen, Taner Z.

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FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences von Banerjee, Sagnik, Bhandary, Priyanka, Woodhouse, Margaret, Sen, Taner Z., Wise, Roger P., Andorf, Carson M.

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Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing von Cagirici, H., Akpinar, Bala, Sen, Taner, Budak, Hikmet

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MaizeGDB update: new tools, data and interface for the maize model organism database von Andorf, Carson M, Cannon, Ethalinda K, Portwood, 2nd, John L, Gardiner, Jack M, Harper, Lisa C, Schaeffer, Mary L, Braun, Bremen L, Campbell, Darwin A, Vinnakota, Abhinav G, Sribalusu, Venktanaga V, Huerta, Miranda, Cho, Kyoung Tak, Wimalanathan, Kokulapalan, Richter, Jacqueline D, Mauch, Emily D, Rao, Bhavani S, Birkett, Scott M, Sen, Taner Z, Lawrence-Dill, Carolyn J

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Genome-Wide Discovery of G-Quadruplexes in Wheat: Distribution and Putative Functional Roles von Cagirici, H. Busra, Sen, Taner Z.

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Fusarium Protein Toolkit: a web-based resource for structural and variant analysis of Fusarium species von Kim, Hye-Seon, Haley, Olivia C, Portwood Ii, John L, Harding, Stephen, Proctor, Robert H, Woodhouse, Margaret R, Sen, Taner Z, Andorf, Carson M

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Coronary Slow Flow Phenomenon Leads to ST Elevation Myocardial Infarction von Sen, Taner

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Harnessing the predicted maize pan-interactome for putative gene function prediction and prioritization of candidate genes for important traits von Poretsky, Elly, Cagirici, Halise Busra, Andorf, Carson M, Sen, Taner Z

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Tissue-specific gene expression and protein abundance patterns are associated with fractionation bias in maize von Walsh, Jesse R., Woodhouse, Margaret R., Andorf, Carson M., Sen, Taner Z.

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Sampling errors: Aristotle's suspect statistical skills von Sen, Taner Z

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Aristotle's suspect statistical skills von Sen, Taner Z.

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LncMachine: a machine learning algorithm for long noncoding RNA annotation in plants von Cagirici, H. Busra, Galvez, S., Sen, Taner Z., Budak, Hikmet

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Building a successful international research community through data sharing: The case of the Wheat Information System (WheatIS) [version 1; peer review: 2 approved, 1 approved with... von Sen, Taner Z, Caccamo, Mario, Edwards, David, Quesneville, Hadi

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Mechanical index von Şen, Taner, Tüfekçioğlu, Omaç, Koza, Yavuzer

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Predicting the Binding Patterns of Hub Proteins: A Study Using Yeast Protein Interaction Networks von Andorf, Carson M, Honavar, Vasant, Sen, Taner Z, Porollo, Aleksey

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Predicting Tissue-Specific mRNA and Protein Abundance in Maize: A Machine Learning Approach von Cho, Kyoung Tak, Sen, Taner Z., Andorf, Carson M.

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