LINCS Data Portal 2.0: next generation access point for perturbation-response signatures von Stathias, Vasileios, Turner, John, Koleti, Amar, Vidovic, Dusica, Cooper, Daniel, Fazel-Najafabadi, Mehdi, Pilarczyk, Marcin, Terryn, Raymond, Chung, Caty, Umeano, Afoma, Clarke, Daniel J B, Lachmann, Alexander, Evangelista, John Erol, Ma’ayan, Avi, Medvedovic, Mario, Schürer, Stephan C

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Pharos 2023: an integrated resource for the understudied human proteome von Kelleher, Keith J, Sheils, Timothy K, Mathias, Stephen L, Yang, Jeremy J, Metzger, Vincent T, Siramshetty, Vishal B, Nguyen, Dac-Trung, Jensen, Lars Juhl, Vidović, Dušica, Schürer, Stephan C, Holmes, Jayme, Sharma, Karlie R, Pillai, Ajay, Bologa, Cristian G, Edwards, Jeremy S, Mathé, Ewy A, Oprea, Tudor I

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SigCom LINCS: data and metadata search engine for a million gene expression signatures von Evangelista, John Erol, Clarke, Daniel J B, Xie, Zhuorui, Lachmann, Alexander, Jeon, Minji, Chen, Kerwin, Jagodnik, Kathleen M, Jenkins, Sherry L, Kuleshov, Maxim V, Wojciechowicz, Megan L, Schürer, Stephan C, Medvedovic, Mario, Ma’ayan, Avi

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Unexplored therapeutic opportunities in the human genome von Oprea, Tudor I., Bologa, Cristian G., Brunak, Søren, Campbell, Allen, Gan, Gregory N., Gaulton, Anna, Gomez, Shawn M., Guha, Rajarshi, Hersey, Anne, Holmes, Jayme, Jadhav, Ajit, Jensen, Lars Juhl, Johnson, Gary L., Karlson, Anneli, Leach, Andrew R., Ma'ayan, Avi, Malovannaya, Anna, Mani, Subramani, Mathias, Stephen L., McManus, Michael T., Meehan, Terrence F., von Mering, Christian, Muthas, Daniel, Nguyen, Dac-Trung, Overington, John P., Papadatos, George, Qin, Jun, Reich, Christian, Roth, Bryan L., Schürer, Stephan C., Simeonov, Anton, Sklar, Larry A., Southall, Noel, Tomita, Susumu, Tudose, Ilinca, Ursu, Oleg, Vidović, Dušica, Waller, Anna, Westergaard, David, Yang, Jeremy J., Zahoránszky-Köhalmi, Gergely

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TCRD and Pharos 2021: mining the human proteome for disease biology von Sheils, Timothy K, Mathias, Stephen L, Kelleher, Keith J, Siramshetty, Vishal B, Nguyen, Dac-Trung, Bologa, Cristian G, Jensen, Lars Juhl, Vidović, Dušica, Koleti, Amar, Schürer, Stephan C, Waller, Anna, Yang, Jeremy J, Holmes, Jayme, Bocci, Giovanni, Southall, Noel, Dharkar, Poorva, Mathé, Ewy, Simeonov, Anton, Oprea, Tudor I

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Connecting omics signatures and revealing biological mechanisms with iLINCS von Pilarczyk, Marcin, Fazel-Najafabadi, Mehdi, Kouril, Michal, Shamsaei, Behrouz, Vasiliauskas, Juozas, Niu, Wen, Mahi, Naim, Zhang, Lixia, Clark, Nicholas A., Ren, Yan, White, Shana, Karim, Rashid, Xu, Huan, Biesiada, Jacek, Bennett, Mark F., Davidson, Sarah E., Reichard, John F., Roberts, Kurt, Stathias, Vasileios, Koleti, Amar, Vidovic, Dusica, Clarke, Daniel J. B., Schürer, Stephan C., Ma’ayan, Avi, Meller, Jarek, Medvedovic, Mario

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Drug and disease signature integration identifies synergistic combinations in glioblastoma von Stathias, Vasileios, Jermakowicz, Anna M., Maloof, Marie E., Forlin, Michele, Walters, Winston, Suter, Robert K., Durante, Michael A., Williams, Sion L., Harbour, J. William, Volmar, Claude-Henry, Lyons, Nicholas J., Wahlestedt, Claes, Graham, Regina M., Ivan, Michael E., Komotar, Ricardo J., Sarkaria, Jann N., Subramanian, Aravind, Golub, Todd R., Schürer, Stephan C., Ayad, Nagi G.

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Best practices for managing and disseminating resources and outreach and evaluating the impact of the IDG Consortium von Vidović, Dušica, Waller, Anna, Holmes, Jayme, Sklar, Larry A., Schürer, Stephan C.

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The Clinical Kinase Index: A Method to Prioritize Understudied Kinases as Drug Targets for the Treatment of Cancer von Essegian, Derek, Khurana, Rimpi, Stathias, Vasileios, Schürer, Stephan C.

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Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data von Koleti, Amar, Terryn, Raymond, Stathias, Vasileios, Chung, Caty, Cooper, Daniel J, Turner, John P, Vidović, Dušica, Forlin, Michele, Kelley, Tanya T, D'Urso, Alessandro, Allen, Bryce K, Torre, Denis, Jagodnik, Kathleen M, Wang, Lily, Jenkins, Sherry L, Mader, Christopher, Niu, Wen, Fazel, Mehdi, Mahi, Naim, Pilarczyk, Marcin, Clark, Nicholas, Shamsaei, Behrouz, Meller, Jarek, Vasiliauskas, Juozas, Reichard, John, Medvedovic, Mario, Ma'ayan, Avi, Pillai, Ajay, Schürer, Stephan C

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Drug Repositioning in Glioblastoma: A Pathway Perspective von Tan, Sze Kiat, Jermakowicz, Anna, Mookhtiar, Adnan K, Nemeroff, Charles B, Schürer, Stephan C, Ayad, Nagi G

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AI-Assisted chemical probe discovery for the understudied Calcium-Calmodulin Dependent Kinase, PNCK von Essegian, Derek J, Chavez, Valery, Khurshid, Rabia, Merchan, Jaime R, Schürer, Stephan C

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Kinome-Wide Virtual Screening by Multi-Task Deep Learning von Hu, Jiaming, Allen, Bryce K, Stathias, Vasileios, Ayad, Nagi G, Schürer, Stephan C

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Allosteric Inhibition of the IRE1α RNase Preserves Cell Viability and Function during Endoplasmic Reticulum Stress von Ghosh, Rajarshi, Wang, Likun, Wang, Eric S., Perera, B. Gayani K., Igbaria, Aeid, Morita, Shuhei, Prado, Kris, Thamsen, Maike, Caswell, Deborah, Macias, Hector, Weiberth, Kurt F., Gliedt, Micah J., Alavi, Marcel V., Hari, Sanjay B., Mitra, Arinjay K., Bhhatarai, Barun, Schürer, Stephan C., Snapp, Erik L., Gould, Douglas B., German, Michael S., Backes, Bradley J., Maly, Dustin J., Oakes, Scott A., Papa, Feroz R.

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Targeted degrader technologies as prospective SARS-CoV-2 therapies von Khurshid, Rabia, Schulz, Joseph M., Hu, Jiaming, Snowden, Timothy S., Reynolds, Robert C., Schürer, Stephan C.

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Relationships between SARS-CoV‑2 in Wastewater and COVID-19 Clinical Cases and Hospitalizations, with and without Normalization against Indicators of Human Waste von Zhan, Qingyu, Babler, Kristina M., Sharkey, Mark E., Amirali, Ayaaz, Beaver, Cynthia C., Boone, Melinda M., Comerford, Samuel, Cooper, Daniel, Cortizas, Elena M., Currall, Benjamin B., Foox, Jonathan, Grills, George S., Kobetz, Erin, Kumar, Naresh, Laine, Jennifer, Lamar, Walter E., Mantero, Alejandro M.A., Mason, Christopher E., Reding, Brian D., Robertson, Maria, Roca, Matthew A., Ryon, Krista, Schürer, Stephan C., Shukla, Bhavarth S., Solle, Natasha Schaefer, Stevenson, Mario, Tallon Jr, John J., Thomas, Collette, Thomas, Tori, Vidović, Dušica, Williams, Sion L., Yin, Xue, Solo-Gabriele, Helena M.

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Potent, Selective, and Orally Bioavailable Quinazoline-Based STK17A/B Dual Inhibitors von Chaudhry, Sana, Castro, Jesus R., Totiger, Tulasigeri M., Afaghani, Jumana, Khurshid, Rabia, Nicholls, Miah, Zhang, Ziming, Schürer, Stephan C., Shah, Ashish, Taylor, Justin, Feng, Yangbo

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Predicting COVID-19 cases using SARS-CoV-2 RNA in air, surface swab and wastewater samples von Solo-Gabriele, Helena M., Kumar, Shelja, Abelson, Samantha, Penso, Johnathon, Contreras, Julio, Babler, Kristina M., Sharkey, Mark E., Mantero, Alejandro M.A., Lamar, Walter E., Tallon, John J., Kobetz, Erin, Solle, Natasha Schaefer, Shukla, Bhavarth S., Kenney, Richard J., Mason, Christopher E., Schürer, Stephan C., Vidovic, Dusica, Williams, Sion L., Grills, George S., Jayaweera, Dushyantha T., Mirsaeidi, Mehdi, Kumar, Naresh

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BioAssay Ontology (BAO): a semantic description of bioassays and high-throughput screening results von Visser, Ubbo, Abeyruwan, Saminda, Vempati, Uma, Smith, Robin P, Lemmon, Vance, Schürer, Stephan C

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Degradation rates influence the ability of composite samples to represent 24-hourly means of SARS-CoV-2 and other microbiological target measures in wastewater von Babler, Kristina M., Sharkey, Mark E., Abelson, Samantha, Amirali, Ayaaz, Benitez, Aymara, Cosculluela, Gabriella A., Grills, George S., Kumar, Naresh, Laine, Jennifer, Lamar, Walter, Lamm, Erik D., Lyu, Jiangnan, Mason, Christopher E., McCabe, Philip M., Raghavender, Joshi, Reding, Brian D., Roca, Matthew A., Schürer, Stephan C., Stevenson, Mario, Szeto, Angela, Tallon, John J., Vidović, Dusica, Zarnegarnia, Yalda, Solo-Gabriele, Helena M.

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