More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes von Stone, Nathan E, Sidak-Loftis, Lindsay C, Sahl, Jason W, Vazquez, Adam J, Wiggins, Kristin B, Gillece, John D, Hicks, Nathan D, Schupp, James M, Busch, Joseph D, Keim, Paul, Wagner, David M

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Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing von Colman, Rebecca E, Schupp, James M, Hicks, Nathan D, Smith, David E, Buchhagen, Jordan L, Valafar, Faramarz, Crudu, Valeriu, Romancenco, Elena, Noroc, Ecaterina, Jackson, Lynn, Catanzaro, Donald G, Rodwell, Timothy C, Catanzaro, Antonino, Keim, Paul, Engelthaler, David M

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Necrotizing Cutaneous Mucormycosis after a Tornado in Joplin, Missouri, in 2011 von Neblett Fanfair, Robyn, Benedict, Kaitlin, Bos, John, Bennett, Sarah D, Lo, Yi-Chun, Adebanjo, Tolu, Etienne, Kizee, Deak, Eszter, Derado, Gordana, Shieh, Wun-Ju, Drew, Clifton, Zaki, Sherif, Sugerman, David, Gade, Lalitha, Thompson, Elizabeth H, Sutton, Deanna A, Engelthaler, David M, Schupp, James M, Brandt, Mary E, Harris, Julie R, Lockhart, Shawn R, Turabelidze, George, Park, Benjamin J

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Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter von Sahl, Jason W, Gillece, John D, Schupp, James M, Waddell, Victor G, Driebe, Elizabeth M, Engelthaler, David M, Keim, Paul

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Best practices for evaluating single nucleotide variant calling methods for microbial genomics von Olson, Nathan D, Lund, Steven P, Colman, Rebecca E, Foster, Jeffrey T, Sahl, Jason W, Schupp, James M, Keim, Paul, Morrow, Jayne B, Salit, Marc L, Zook, Justin M

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A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens von Sahl, Jason W, Pearson, Talima, Okinaka, Richard, Schupp, James M, Gillece, John D, Heaton, Hannah, Birdsell, Dawn, Hepp, Crystal, Fofanov, Viacheslav, Noseda, Ramón, Fasanella, Antonio, Hoffmaster, Alex, Wagner, David M, Keim, Paul

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High Leptospira Diversity in Animals and Humans Complicates the Search for Common Reservoirs of Human Disease in Rural Ecuador von Barragan, Veronica, Chiriboga, Jorge, Miller, Erin, Olivas, Sonora, Birdsell, Dawn, Hepp, Crystal, Hornstra, Heidie, Schupp, James M, Morales, Melba, Gonzalez, Manuel, Reyes, Soraya, de la Cruz, Carmen, Keim, Paul, Hartskeerl, Rudy, Trueba, Gabriel, Pearson, Talima

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Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus von Driebe, Elizabeth M, Sahl, Jason W, Roe, Chandler, Bowers, Jolene R, Schupp, James M, Gillece, John D, Kelley, Erin, Price, Lance B, Pearson, Talima R, Hepp, Crystal M, Brzoska, Pius M, Cummings, Craig A, Furtado, Manohar R, Andersen, Paal S, Stegger, Marc, Engelthaler, David M, Keim, Paul S

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Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity von Gillece, John D, Schupp, James M, Balajee, S Arunmozhi, Harris, Julie, Pearson, Talima, Yan, Yongpan, Keim, Paul, DeBess, Emilio, Marsden-Haug, Nicola, Wohrle, Ron, Engelthaler, David M, Lockhart, Shawn R

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Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak von Hendriksen, Rene S, Price, Lance B, Schupp, James M, Gillece, John D, Kaas, Rolf S, Engelthaler, David M, Bortolaia, Valeria, Pearson, Talima, Waters, Andrew E, Upadhyay, Bishnu Prasad, Shrestha, Sirjana Devi, Adhikari, Shailaja, Shakya, Geeta, Keim, Paul S, Aarestrup, Frank M

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Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage von Muller, Emilie E. L., Pinel, Nicolás, Laczny, Cédric C., Hoopmann, Michael R., Narayanasamy, Shaman, Lebrun, Laura A., Roume, Hugo, Lin, Jake, May, Patrick, Hicks, Nathan D., Heintz-Buschart, Anna, Wampach, Linda, Liu, Cindy M., Price, Lance B., Gillece, John D., Guignard, Cédric, Schupp, James M., Vlassis, Nikos, Baliga, Nitin S., Moritz, Robert L., Keim, Paul S., Wilmes, Paul

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Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe von Price, Erin P, Seymour, Meagan L, Sarovich, Derek S, Latham, Jennie, Wolken, Spenser R, Mason, Joanne, Vincent, Gemma, Drees, Kevin P, Beckstrom-Sternberg, Stephen M, Phillippy, Adam M, Koren, Sergey, Okinaka, Richard T, Chung, Wai-Kwan, Schupp, James M, Wagner, David M, Vipond, Richard, Foster, Jeffrey T, Bergman, Nicholas H, Burans, James, Pearson, Talima, Brooks, Tim, Keim, Paul

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The genome and variation of Bacillus anthracis von Keim, Paul, Gruendike, Jeffrey M., Klevytska, Alexandra M., Schupp, James M., Challacombe, Jean, Okinaka, Richard

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Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei von Hall, Carina M, Busch, Joseph D, Shippy, Kenzie, Allender, Christopher J, Kaestli, Mirjam, Mayo, Mark, Sahl, Jason W, Schupp, James M, Colman, Rebecca E, Keim, Paul, Currie, Bart J, Wagner, David M

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The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers von Sahl, Jason W, Vazquez, Adam J, Hall, Carina M, Busch, Joseph D, Tuanyok, Apichai, Mayo, Mark, Schupp, James M, Lummis, Madeline, Pearson, Talima, Shippy, Kenzie, Colman, Rebecca E, Allender, Christopher J, Theobald, Vanessa, Sarovich, Derek S, Price, Erin P, Hutcheson, Alex, Korlach, Jonas, LiPuma, John J, Ladner, Jason, Lovett, Sean, Koroleva, Galina, Palacios, Gustavo, Limmathurotsakul, Direk, Wuthiekanun, Vanaporn, Wongsuwan, Gumphol, Currie, Bart J, Keim, Paul, Wagner, David M

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Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence von Sahl, Jason W, Allender, Christopher J, Colman, Rebecca E, Califf, Katy J, Schupp, James M, Currie, Bart J, Van Zandt, Kristopher E, Gelhaus, H Carl, Keim, Paul, Tuanyok, Apichai

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Bacillus anthracis in China and its relationship to worldwide lineages von Simonson, Tatum S, Okinaka, Richard T, Wang, Bingxiang, Easterday, W Ryan, Huynh, Lynn, U'Ren, Jana M, Dukerich, Meghan, Zanecki, Shaylan R, Kenefic, Leo J, Beaudry, Jodi, Schupp, James M, Pearson, Talima, Wagner, David M, Hoffmaster, Alex, Ravel, Jacques, Keim, Paul

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Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis von Price, Erin P, Sarovich, Derek S, Webb, Jessica R, Hall, Carina M, Jaramillo, Sierra A, Sahl, Jason W, Kaestli, Mirjam, Mayo, Mark, Harrington, Glenda, Baker, Anthony L, Sidak-Loftis, Lindsay C, Settles, Erik W, Lummis, Madeline, Schupp, James M, Gillece, John D, Tuanyok, Apichai, Warner, Jeffrey, Busch, Joseph D, Keim, Paul, Currie, Bart J, Wagner, David M

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Genome Sequence of “Candidatus Microthrix parvicella” Bio17-1, a Long-Chain-Fatty-Acid-Accumulating Filamentous Actinobacterium from a Biological Wastewater Treatment Plant von MULLER, Emilie E. L, PINEL, Nicolás, KORLACH, Jonas, KEIM, Paul S, WILMES, Paul, GILLECE, John D, SCHUPP, James M, PRICE, Lance B, ENGELTHALER, David M, LEVANTESI, Caterina, TANDOI, Valter, LUONG, Khai, BALIGA, Nitin S

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Pre-Columbian origins for North American anthrax von Kenefic, Leo J, Pearson, Talima, Okinaka, Richard T, Schupp, James M, Wagner, David M, Hoffmaster, Alex R, Trim, Carla B, Trim, Carla P, Chung, Wai-Kwan, Beaudry, Jodi A, Jiang, Lingxia, Gajer, Pawel, Foster, Jeffrey T, Mead, James I, Ravel, Jacques, Keim, Paul

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