Global Epigenomic Reconfiguration During Mammalian Brain Development von Lister, Ryan, Mukamel, Eran A., Nery, Joseph R., Urich, Mark, Puddifoot, Clare A., Johnson, Nicholas D., Lucero, Jacinta, Huang, Yun, Dwork, Andrew J., Schultz, Matthew D., Yu, Miao, Tonti-Filippini, Julian, Heyn, Holger, Hu, Shijun, Wu, Joseph C., Rao, Anjana, Esteller, Manel, He, Chuan, Haghighi, Fatemeh G., Sejnowski, Terrence J., Behrens, M. Margarita, Ecker, Joseph R.

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Patterns of population epigenomic diversity von Schmitz, Robert J., Schultz, Matthew D., Urich, Mark A., Nery, Joseph R., Pelizzola, Mattia, Libiger, Ondrej, Alix, Andrew, McCosh, Richard B., Chen, Huaming, Schork, Nicholas J., Ecker, Joseph R.

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Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements von Secco, David, Wang, Chuang, Shou, Huixia, Schultz, Matthew D, Chiarenza, Serge, Nussaume, Laurent, Ecker, Joseph R, Whelan, James, Lister, Ryan

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Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants von Schmitz, Robert J., Schultz, Matthew D., Lewsey, Mathew G., O'Malley, Ronan C., Urich, Mark A., Libiger, Ondrej, Schork, Nicholas J., Ecker, Joseph R.

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The Developmental Potential of iPSCs Is Greatly Influenced by Reprogramming Factor Selection von Buganim, Yosef, Markoulaki, Styliani, van Wietmarschen, Niek, Hoke, Heather, Wu, Tao, Ganz, Kibibi, Akhtar-Zaidi, Batool, He, Yupeng, Abraham, Brian J., Porubsky, David, Kulenkampff, Elisabeth, Faddah, Dina A., Shi, Linyu, Gao, Qing, Sarkar, Sovan, Cohen, Malkiel, Goldmann, Johanna, Nery, Joseph R., Schultz, Matthew D., Ecker, Joseph R., Xiao, Andrew, Young, Richard A., Lansdorp, Peter M., Jaenisch, Rudolf

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Dynamic and rapid changes in the transcriptome and epigenome during germination and in developing rice (Oryza sativa) coleoptiles under anoxia and re‐oxygenation von Narsai, Reena, Secco, David, Schultz, Matthew D., Ecker, Joseph R., Lister, Ryan, Whelan, James

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RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites von Johnson, David B F, Xu, Jianfeng, Shen, Zhouxin, Takimoto, Jeffrey K, Schultz, Matthew D, Schmitz, Robert J, Xiang, Zheng, Ecker, Joseph R, Briggs, Steven P, Wang, Lei

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‘Leveling’ the playing field for analyses of single-base resolution DNA methylomes von Schultz, Matthew D, Schmitz, Robert J, Ecker, Joseph R

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Epigenomic programming contributes to the genomic drift evolution of the F-Box protein superfamily in Arabidopsis von Hua, Zhihua, Pool, John E., Schmitz, Robert J., Schultz, Matthew D., Shiu, Shin-Han, Ecker, Joseph R., Vierstra, Richard D.

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Integrative analysis of 111 reference human epigenomes von Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Bilenky, Misha, Yen, Angela, Heravi-Moussavi, Alireza, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ziller, Michael J., Amin, Viren, Whitaker, John W., Schultz, Matthew D., Ward, Lucas D., Sarkar, Abhishek, Quon, Gerald, Sandstrom, Richard S., Eaton, Matthew L., Wu, Yi-Chieh, Pfenning, Andreas R., Wang, Xinchen, Claussnitzer, Melina, Liu, Yaping, Coarfa, Cristian, Harris, R. Alan, Shoresh, Noam, Epstein, Charles B., Gjoneska, Elizabeta, Leung, Danny, Xie, Wei, Hawkins, R. David, Lister, Ryan, Hong, Chibo, Gascard, Philippe, Mungall, Andrew J., Moore, Richard, Chuah, Eric, Tam, Angela, Canfield, Theresa K., Hansen, R. Scott, Kaul, Rajinder, Sabo, Peter J., Bansal, Mukul S., Carles, Annaick, Dixon, Jesse R., Farh, Kai-How, Feizi, Soheil, Karlic, Rosa, Kim, Ah-Ram, Kulkarni, Ashwinikumar, Li, Daofeng, Lowdon, Rebecca, Elliott, GiNell, Mercer, Tim R., Neph, Shane J., Onuchic, Vitor, Polak, Paz, Rajagopal, Nisha, Ray, Pradipta, Sallari, Richard C., Siebenthall, Kyle T., Sinnott-Armstrong, Nicholas A., Stevens, Michael, Thurman, Robert E., Wu, Jie, Zhang, Bo, Zhou, Xin, Beaudet, Arthur E., Boyer, Laurie A., De Jager, Philip L., Farnham, Peggy J., Fisher, Susan J., Haussler, David, Jones, Steven J. M., Li, Wei, Marra, Marco A., McManus, Michael T., Sunyaev, Shamil, Thomson, James A., Tlsty, Thea D., Tsai, Li-Huei, Wang, Wei, Waterland, Robert A., Zhang, Michael Q., Chadwick, Lisa H., Bernstein, Bradley E., Costello, Joseph F., Ecker, Joseph R., Hirst, Martin, Meissner, Alexander, Milosavljevic, Aleksandar, Ren, Bing, Stamatoyannopoulos, John A., Wang, Ting, Kellis, Manolis

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Human body epigenome maps reveal noncanonical DNA methylation variation von Schultz, Matthew D., He, Yupeng, Whitaker, John W., Hariharan, Manoj, Mukamel, Eran A., Leung, Danny, Rajagopal, Nisha, Nery, Joseph R., Urich, Mark A., Chen, Huaming, Lin, Shin, Lin, Yiing, Jung, Inkyung, Schmitt, Anthony D., Selvaraj, Siddarth, Ren, Bing, Sejnowski, Terrence J., Wang, Wei, Ecker, Joseph R.

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Abnormalities in human pluripotent cells due to reprogramming mechanisms von Ma, Hong, Morey, Robert, O'Neil, Ryan C., He, Yupeng, Daughtry, Brittany, Schultz, Matthew D., Hariharan, Manoj, Nery, Joseph R., Castanon, Rosa, Sabatini, Karen, Thiagarajan, Rathi D., Tachibana, Masahito, Kang, Eunju, Tippner-Hedges, Rebecca, Ahmed, Riffat, Gutierrez, Nuria Marti, Van Dyken, Crystal, Polat, Alim, Sugawara, Atsushi, Sparman, Michelle, Gokhale, Sumita, Amato, Paula, P.Wolf, Don, Ecker, Joseph R., Laurent, Louise C., Mitalipov, Shoukhrat

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Active DNA demethylation at enhancers during the vertebrate phylotypic period von Bogdanović, Ozren, Smits, Arne H, de la Calle Mustienes, Elisa, Tena, Juan J, Ford, Ethan, Williams, Ruth, Senanayake, Upeka, Schultz, Matthew D, Hontelez, Saartje, van Kruijsbergen, Ila, Rayon, Teresa, Gnerlich, Felix, Carell, Thomas, Veenstra, Gert Jan C, Manzanares, Miguel, Sauka-Spengler, Tatjana, Ecker, Joseph R, Vermeulen, Michiel, Gómez-Skarmeta, José Luis, Lister, Ryan

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Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells von Xie, Wei, Schultz, Matthew D., Lister, Ryan, Hou, Zhonggang, Rajagopal, Nisha, Ray, Pradipta, Whitaker, John W., Tian, Shulan, Hawkins, R. David, Leung, Danny, Yang, Hongbo, Wang, Tao, Lee, Ah Young, Swanson, Scott A., Zhang, Jiuchun, Zhu, Yun, Kim, Audrey, Nery, Joseph R., Urich, Mark A., Kuan, Samantha, Yen, Chia-an, Klugman, Sarit, Yu, Pengzhi, Suknuntha, Kran, Propson, Nicholas E., Chen, Huaming, Edsall, Lee E., Wagner, Ulrich, Li, Yan, Ye, Zhen, Kulkarni, Ashwinikumar, Xuan, Zhenyu, Chung, Wen-Yu, Chi, Neil C., Antosiewicz-Bourget, Jessica E., Slukvin, Igor, Stewart, Ron, Zhang, Michael Q., Wang, Wei, Thomson, James A., Ecker, Joseph R., Ren, Bing

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Surveillance of 3' Noncoding Transcripts Requires FIERY1 and XRN3 in Arabidopsis von Kurihara, Yukio, Schmitz, Robert J, Nery, Joseph R, Schultz, Matthew D, Okubo-Kurihara, Emiko, Morosawa, Taeko, Tanaka, Maho, Toyoda, Tetsuro, Seki, Motoaki, Ecker, Joseph R

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Release Factor One Is Nonessential in Escherichia coli von Johnson, David B. F, Wang, Chong, Xu, Jianfeng, Schultz, Matthew D, Schmitz, Robert J, Ecker, Joseph R, Wang, Lei

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Correction: Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation von Schultz, Matthew D., He, Yupeng, Whitaker, John W., Hariharan, Manoj, Mukamel, Eran A., Leung, Danny, Rajagopal, Nisha, Nery, Joseph R., Urich, Mark A., Chen, Huaming, Lin, Shin, Lin, Yiing, Jung, Inkyung, Schmitt, Anthony D., Selvaraj, Siddarth, Ren, Bing, Sejnowski, Terrence J., Wang, Wei, Ecker, Joseph R.

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Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation von Schultz, Matthew D, He, Yupeng, Whitaker, John W, Hariharan, Manoj, Mukamel, Eran A, Leung, Danny, Rajagopal, Nisha, Nery, Joseph R, Urich, Mark A, Chen, Huaming, Lin, Shin, Lin, Yiing, Jung, Inkyung, Schmitt, Anthony D, Selvaraj, Siddarth, Ren, Bing, Sejnowski, Terrence J, Wang, Wei, Ecker, Joseph R

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Erratum: Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation von Schultz, Matthew D., He, Yupeng, Whitaker, John W., Hariharan, Manoj, Mukamel, Eran A., Leung, Danny, Rajagopal, Nisha, Nery, Joseph R., Urich, Mark A., Chen, Huaming, Lin, Shin, Lin, Yiing, Jung, Inkyung, Schmitt, Anthony D., Selvaraj, Siddarth, Ren, Bing, Sejnowski, Terrence J., Wang, Wei, Ecker, Joseph R.

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Radiographic Predictors of Surgical Management of Symptomatic Calcaneal Spurs: A Retrospective Cohort Study von McCahon, Joseph A.S, Kohring, Adam, Schultz, Matthew, Massaglia, Joseph, Parekh, Selene G., Pedowitz, David I., Daniel, Joseph N.

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