OptiType: precision HLA typing from next-generation sequencing data von Szolek, András, Schubert, Benjamin, Mohr, Christopher, Sturm, Marc, Feldhahn, Magdalena, Kohlbacher, Oliver

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Graph-theoretical formulation of the generalized epitope-based vaccine design problem von Dorigatti, Emilio, Schubert, Benjamin

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Predicting antigen specificity of single T cells based on TCR CDR3 regions von Fischer, David S, Wu, Yihan, Schubert, Benjamin, Theis, Fabian J

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Antigen-Specific Treg Therapy in Type 1 Diabetes - Challenges and Opportunities von Serr, Isabelle, Drost, Felix, Schubert, Benjamin, Daniel, Carolin

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The EVcouplings Python framework for coevolutionary sequence analysis von Hopf, Thomas A, Green, Anna G, Schubert, Benjamin, Mersmann, Sophia, Schärfe, Charlotta P I, Ingraham, John B, Toth-Petroczy, Agnes, Brock, Kelly, Riesselman, Adam J, Palmedo, Perry, Kang, Chan, Sheridan, Robert, Draizen, Eli J, Dallago, Christian, Sander, Chris, Marks, Debora S

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Multi-modal generative modeling for joint analysis of single-cell T cell receptor and gene expression data von Drost, Felix, An, Yang, Bonafonte-Pardàs, Irene, Dratva, Lisa M., Lindeboom, Rik G. H., Haniffa, Muzlifah, Teichmann, Sarah A., Theis, Fabian, Lotfollahi, Mohammad, Schubert, Benjamin

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Population-specific design of de-immunized protein biotherapeutics von Schubert, Benjamin, Schärfe, Charlotta, Dönnes, Pierre, Hopf, Thomas, Marks, Debora, Kohlbacher, Oliver

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Self-sustaining IL-8 loops drive a prothrombotic neutrophil phenotype in severe COVID-19 von Kaiser, Rainer, Leunig, Alexander, Pekayvaz, Kami, Popp, Oliver, Joppich, Markus, Polewka, Vivien, Escaig, Raphael, Anjum, Afra, Hoffknecht, Marie-Louise, Gold, Christoph, Brambs, Sophia, Engel, Anouk, Stockhausen, Sven, Knottenberg, Viktoria, Titova, Anna, Haji, Mohamed, Scherer, Clemens, Muenchhoff, Maximilian, Hellmuth, Johannes C, Saar, Kathrin, Schubert, Benjamin, Hilgendorff, Anne, Schulz, Christian, Kääb, Stefan, Zimmer, Ralf, Hübner, Norbert, Massberg, Steffen, Mertins, Philipp, Nicolai, Leo, Stark, Konstantin

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Enhancement of a 3-DOF submerged wave energy device using bistability von Schubert, Benjamin, Robertson, William S. P., Cazzolato, Benjamin S.

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ImmunoNodes - graphical development of complex immunoinformatics workflows von Schubert, Benjamin, de la Garza, Luis, Mohr, Christopher, Walzer, Mathias, Kohlbacher, Oliver

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An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides von Domingo-Calap, Pilar, Schubert, Benjamin, Joly, Mélanie, Solis, Morgane, Untrau, Meiggie, Carapito, Raphael, Georgel, Philippe, Caillard, Sophie, Fafi-Kremer, Samira, Paul, Nicodème, Kohlbacher, Oliver, González-Candelas, Fernando, Bahram, Seiamak

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Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings von Schubert, Benjamin, Maddamsetti, Rohan, Nyman, Jackson, Farhat, Maha R., Marks, Debora S.

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Joint epitope selection and spacer design for string-of-beads vaccines von Dorigatti, Emilio, Schubert, Benjamin

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The Semantic-Procedural Interface Model of the Self: The Role of Self-Knowledge for Context-Dependent Versus Context-Independent Modes of Thinking von Kühnen, Ulrich, Hannover, Bettina, Schubert, Benjamin

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Designing string-of-beads vaccines with optimal spacers von Schubert, Benjamin, Kohlbacher, Oliver

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Best practices for single-cell analysis across modalities von Heumos, Lukas, Schaar, Anna C., Lance, Christopher, Litinetskaya, Anastasia, Drost, Felix, Zappia, Luke, Lücken, Malte D., Strobl, Daniel C., Henao, Juan, Curion, Fabiola, Schiller, Herbert B., Theis, Fabian J.

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General Machine Learning-Based Approach to Pulse Classification for Separation of Partial Discharges and Interference von Ogliari, Emanuele, Sakwa, Maciej, Wei, Jianguo, Liu, Weilin, Schubert, Benjamin, Palo, Mauro

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Predicting antigen specificity of single T cells based on TCR CDR 3 regions von Fischer, David S, Wu, Yihan, Schubert, Benjamin, Theis, Fabian J

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Linear and nonlinear hydrodynamic models for dynamics of a submerged point absorber wave energy converter von Schubert, Benjamin W., Robertson, William S.P., Cazzolato, Benjamin S., Ghayesh, Mergen H.

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The true potential of nonlinear stiffness for point absorbing wave energy converters von Schubert, Benjamin W., Sergiienko, Nataliia Y., Cazzolato, Benjamin S., Robertson, William S.P., Ghayesh, Mergen H.

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