Assemblytics: a web analytics tool for the detection of variants from an assembly von Nattestad, Maria, Schatz, Michael C

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CloudBurst: highly sensitive read mapping with MapReduce von Schatz, Michael C.

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GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes von Ranallo-Benavidez, T. Rhyker, Jaron, Kamil S., Schatz, Michael C.

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Big Data: Astronomical or Genomical? von Stephens, Zachary D, Lee, Skylar Y, Faghri, Faraz, Campbell, Roy H, Zhai, Chengxiang, Efron, Miles J, Iyer, Ravishankar, Schatz, Michael C, Sinha, Saurabh, Robinson, Gene E

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Targeted nanopore sequencing by real-time mapping of raw electrical signal with UNCALLED von Kovaka, Sam, Fan, Yunfan, Ni, Bohan, Timp, Winston, Schatz, Michael C.

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Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing von Alonge, Michael, Lebeigle, Ludivine, Kirsche, Melanie, Jenike, Katie, Ou, Shujun, Aganezov, Sergey, Wang, Xingang, Lippman, Zachary B, Schatz, Michael C, Soyk, Sebastian

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RaGOO: fast and accurate reference-guided scaffolding of draft genomes von Alonge, Michael, Soyk, Sebastian, Ramakrishnan, Srividya, Wang, Xingang, Goodwin, Sara, Sedlazeck, Fritz J, Lippman, Zachary B, Schatz, Michael C

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Piercing the dark matter: bioinformatics of long-range sequencing and mapping von Sedlazeck, Fritz J., Lee, Hayan, Darby, Charlotte A., Schatz, Michael C.

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Accurate detection of complex structural variations using single-molecule sequencing von Sedlazeck, Fritz J., Rescheneder, Philipp, Smolka, Moritz, Fang, Han, Nattestad, Maria, von Haeseler, Arndt, Schatz, Michael C.

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GenomeScope: fast reference-free genome profiling from short reads von Vurture, Gregory W, Sedlazeck, Fritz J, Nattestad, Maria, Underwood, Charles J, Fang, Han, Gurtowski, James, Schatz, Michael C

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Nanopore sequencing meets epigenetics von Schatz, Michael C

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Jasmine and Iris: population-scale structural variant comparison and analysis von Kirsche, Melanie, Prabhu, Gautam, Sherman, Rachel, Ni, Bohan, Battle, Alexis, Aganezov, Sergey, Schatz, Michael C.

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De Novo Gene Disruptions in Children on the Autistic Spectrum von Iossifov, Ivan, Ronemus, Michael, Levy, Dan, Wang, Zihua, Hakker, Inessa, Rosenbaum, Julie, Yamrom, Boris, Lee, Yoon-ha, Narzisi, Giuseppe, Leotta, Anthony, Kendall, Jude, Grabowska, Ewa, Ma, Beicong, Marks, Steven, Rodgers, Linda, Stepansky, Asya, Troge, Jennifer, Andrews, Peter, Bekritsky, Mitchell, Pradhan, Kith, Ghiban, Elena, Kramer, Melissa, Parla, Jennifer, Demeter, Ryan, Fulton, Lucinda L., Fulton, Robert S., Magrini, Vincent J., Ye, Kenny, Darnell, Jennifer C., Darnell, Robert B., Mardis, Elaine R., Wilson, Richard K., Schatz, Michael C., McCombie, W. Richard, Wigler, Michael

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Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato von Alonge, Michael, Wang, Xingang, Benoit, Matthias, Soyk, Sebastian, Pereira, Lara, Zhang, Lei, Suresh, Hamsini, Ramakrishnan, Srividya, Maumus, Florian, Ciren, Danielle, Levy, Yuval, Harel, Tom Hai, Shalev-Schlosser, Gili, Amsellem, Ziva, Razifard, Hamid, Caicedo, Ana L., Tieman, Denise M., Klee, Harry, Kirsche, Melanie, Aganezov, Sergey, Ranallo-Benavidez, T. Rhyker, Lemmon, Zachary H., Kim, Jennifer, Robitaille, Gina, Kramer, Melissa, Goodwin, Sara, McCombie, W. Richard, Hutton, Samuel, Van Eck, Joyce, Gillis, Jesse, Eshed, Yuval, Sedlazeck, Fritz J., van der Knaap, Esther, Schatz, Michael C., Lippman, Zachary B.

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Oxford Nanopore sequencing, hybrid error correction, and de novo assembly of a eukaryotic genome von Goodwin, Sara, Gurtowski, James, Ethe-Sayers, Scott, Deshpande, Panchajanya, Schatz, Michael C, McCombie, W Richard

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BEATRICE: Bayesian fine-mapping from summary data using deep variational inference von Ghosal, Sayan, Schatz, Michael C, Venkataraman, Archana

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Oral corticosteroid exposure and adverse effects in asthmatic patients von Sullivan, Patrick W., PhD, Ghushchyan, Vahram H., PhD, Globe, Gary, PhD, Schatz, Michael, MD

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Assembly complexity of prokaryotic genomes using short reads von Kingsford, Carl, Schatz, Michael C, Pop, Mihai

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Hybrid error correction and de novo assembly of single-molecule sequencing reads von Koren, Sergey, Schatz, Michael C, Walenz, Brian P, Martin, Jeffrey, Howard, Jason T, Ganapathy, Ganeshkumar, Wang, Zhong, Rasko, David A, McCombie, W Richard, Jarvis, Erich D, Phillippy, Adam M

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Approaching complete genomes, transcriptomes and epi-omes with accurate long-read sequencing von Kovaka, Sam, Ou, Shujun, Jenike, Katharine M., Schatz, Michael C.

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