ImmunoDataAnalyzer: a bioinformatics pipeline for processing barcoded and UMI tagged immunological NGS data von Vetter, Julia, Schaller, Susanne, Heinzel, Andreas, Aschauer, Constantin, Reindl-Schwaighofer, Roman, Jelencsics, Kira, Hu, Karin, Oberbauer, Rainer, Winkler, Stephan M

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Prospective Tracking of Donor-Reactive T-Cell Clones in the Circulation and Rejecting Human Kidney Allografts von Aschauer, Constantin, Jelencsics, Kira, Hu, Karin, Heinzel, Andreas, Gregorich, Mariella Gloria, Vetter, Julia, Schaller, Susanne, Winkler, Stephan M, Weinberger, Johannes, Pimenov, Lisabeth, Gualdoni, Guido A, Eder, Michael, Kainz, Alexander, Troescher, Anna Regina, Regele, Heinz, Reindl-Schwaighofer, Roman, Wekerle, Thomas, Huppa, Johannes Bernhard, Sykes, Megan, Oberbauer, Rainer

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H. pylori modulates DC functions via T4SS/TNFα/p38-dependent SOCS3 expression von Sarajlic, Muamera, Neuper, Theresa, Vetter, Julia, Schaller, Susanne, Klicznik, Maria M, Gratz, Iris K, Wessler, Silja, Posselt, Gernot, Horejs-Hoeck, Jutta

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IMPI: An Interface for Low-Frequency Point Mutation Identification Exemplified on Resistance Mutations in Chronic Myeloid Leukemia von Vetter, Julia, Burghofer, Jonathan, Malli, Theodora, Lin, Anna M., Webersinke, Gerald, Wiederstein, Markus, Winkler, Stephan M., Schaller, Susanne

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Targeting NLRP3 inhibits AML progression by inducing PERK/eIF2-mediated apoptosis von Luciano, Michela, Sieberer, Helene, Krenn, Peter W, Dang, Hieu-Hoa, Vetter, Julia, Neuper, Theresa, Amend, Diana, Blöchl, Constantin, Weichenberger, Christian X, Eglseer, Anna, Unger, Michael S, Andosch, Ancuela, Steiner, Philip, Neureiter, Daniel, Bauer, Renate, Hummer, Laura, Tesanovic, Suzana, Binder, Stephanie, Elmer, Dominik P, Strandt, Helen, Schaller, Susanne, Strunk, Dirk, Pleyer, Lisa, Greil, Richard, Winkler, Stephan, Hartmann, Tanja N, Schmidt-Arras, Dirk, Huber, Christian G, Aberger, Fritz, Horejs-Hoeck, Jutta

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Immune Repertoire Profiling Reveals that Clonally Expanded B and T Cells Infiltrating Diseased Human Kidneys Can Also Be Tracked in Blood von Weinberger, Johannes, Jimenez-Heredia, Raul, Schaller, Susanne, Suessner, Susanne, Sunzenauer, Judith, Reindl-Schwaighofer, Roman, Weiss, Richard, Winkler, Stephan, Gabriel, Christian, Danzer, Martin, Oberbauer, Rainer

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Next generation sequencing based assessment of the alloreactive T cell receptor repertoire in kidney transplant patients during rejection: a prospective cohort study von Aschauer, Constantin, Jelencsics, Kira, Hu, Karin, Heinzel, Andreas, Vetter, Julia, Fraunhofer, Thomas, Schaller, Susanne, Winkler, Stephan, Pimenov, Lisabeth, Gualdoni, Guido A, Eder, Michael, Kainz, Alexander, Regele, Heinz, Reindl-Schwaighofer, Roman, Oberbauer, Rainer

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Increased Levels of Antimicrobial Peptides in Tracheal Aspirates of Newborn Infants during Infection von SCHALLER-BALS, SUSANNE, SCHULZE, ANDREAS, BALS, ROBERT

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Seasonal movements of American horseshoe crabs Limulus polyphemus in the Great Bay Estuary, New Hampshire (USA) von Schaller, Susanne Y., Chabot, Christopher C., Watson, Winsor H.

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Identification of immunologic factors associated with allograft rejection using NGS T cell receptor repertoire data von Vetter, Julia, Aschauer, Constantin, Heinzel, Andreas, Reindl-Schweighofer, Roman, Jelencsics, Kira, Hu, Karin, Oberbauer, Rainer, Winkler, Stephan, Schaller, Susanne

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Laser‐facilitated epicutaneous immunotherapy with hypoallergenic beta‐glucan neoglycoconjugates suppresses lung inflammation and avoids local side effects in a mouse model of aller... von Korotchenko, Evgeniia, Schießl, Viktoria, Scheiblhofer, Sandra, Schubert, Mario, Dall, Elfriede, Joubert, Isabella A., Strandt, Helen, Neuper, Theresa, Sarajlic, Muamera, Bauer, Renate, Geppert, Mark, Joedicke, David, Wildner, Sabrina, Schaller, Susanne, Winkler, Stephan, Gadermaier, Gabriele, Horejs‐Hoeck, Jutta, Weiss, Richard

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ImmunExplorer (IMEX): a software framework for diversity and clonality analyses of immunoglobulins and T cell receptors on the basis of IMGT/HighV-QUEST preprocessed NGS data von Schaller, Susanne, Weinberger, Johannes, Jimenez-Heredia, Raul, Danzer, Martin, Oberbauer, Rainer, Gabriel, Christian, Winkler, Stephan M

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Data-based prediction of sentiments using heterogeneous model ensembles von Winkler, Stephan, Schaller, Susanne, Dorfer, Viktoria, Affenzeller, Michael, Petz, Gerald, Karpowicz, Michał

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Natural protective immunity against grass pollen allergy is maintained by a diverse spectrum of response types von Kurtaj, Almedina, Hillebrand, Christoph, Fichtinger, Gerda, Hattinger, Eva, Lietzenmayer, Melanie, Machado, Yoan, Scheiblhofer, Sandra, Stoecklinger, Angelika, Thalhamer, Theresa, Suessner, Susanne, Danzer, Martin, Keplinger, Sabine, Weinberger, Johannes, Schaller, Susanne, Winkler, Stephan, Gabriel, Christian, Thalhamer, Josef, Weiss, Richard

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IL-1β Induces SOCS2 Expression in Human Dendritic Cells von Sarajlic, Muamera, Neuper, Theresa, Föhrenbach Quiroz, Kim Tamara, Michelini, Sara, Vetter, Julia, Schaller, Susanne, Horejs-Hoeck, Jutta

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The Class IIA Histone Deacetylase (HDAC) Inhibitor TMP269 Downregulates Ribosomal Proteins and Has Anti-Proliferative and Pro-Apoptotic Effects on AML Cells von Urwanisch, Laura, Unger, Michael Stefan, Sieberer, Helene, Dang, Hieu-Hoa, Neuper, Theresa, Regl, Christof, Vetter, Julia, Schaller, Susanne, Winkler, Stephan M, Kerschbamer, Emanuela, Weichenberger, Christian X, Krenn, Peter W, Luciano, Michela, Pleyer, Lisa, Greil, Richard, Huber, Christian G, Aberger, Fritz, Horejs-Hoeck, Jutta

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Single Molecule Fluorescence Microscopy and Machine Learning for Rhesus D Antigen Classification von Borgmann, Daniela M., Mayr, Sandra, Polin, Helene, Schaller, Susanne, Dorfer, Viktoria, Obritzberger, Lisa, Endmayr, Tanja, Gabriel, Christian, Winkler, Stephan M., Jacak, Jaroslaw

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Prediction of Stem Cell Differentiation in Human Amniotic Membrane Images Using Machine Learning von Obritzberger, Lisa, Borgmann, Daniela, Schaller, Susanne, Dorfer, Viktoria, Lindenmair, Andrea, Wolbank, Susanne, Hennerbichler, Simone, Redl, Heinz, Winkler, Stephan

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Characterization of the Distance Relationship Between Localized Serotonin Receptors and Glia Cells on Fluorescence Microscopy Images of Brain Tissue von Jacak, Jaroslaw, Schaller, Susanne, Borgmann, Daniela, Winkler, Stephan M.

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H. pylorimodulates DC functions via T4SS/TNFα/p38-dependent SOCS3 expression von Sarajlic, Muamera, Neuper, Theresa, Vetter, Julia, Schaller, Susanne, Klicznik, Maria M, Gratz, Iris K, Wessler, Silja, Posselt, Gernot, Horejs-Hoeck, Jutta

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