ECOD: an evolutionary classification of protein domains von Cheng, Hua, Schaeffer, R Dustin, Liao, Yuxing, Kinch, Lisa N, Pei, Jimin, Shi, Shuoyong, Kim, Bong-Hyun, Grishin, Nick V

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Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14) von Kinch, Lisa N., Schaeffer, R. Dustin, Kryshtafovych, Andriy, Grishin, Nick V.

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Accurate prediction of protein structures and interactions using a three-track neural network von Baek, Minkyung, DiMaio, Frank, Anishchenko, Ivan, Dauparas, Justas, Ovchinnikov, Sergey, Lee, Gyu Rie, Wang, Jue, Cong, Qian, Kinch, Lisa N, Schaeffer, R Dustin, Millán, Claudia, Park, Hahnbeom, Adams, Carson, Glassman, Caleb R, DeGiovanni, Andy, Pereira, Jose H, Rodrigues, Andria V, van Dijk, Alberdina A, Ebrecht, Ana C, Opperman, Diederik J, Sagmeister, Theo, Buhlheller, Christoph, Pavkov-Keller, Tea, Rathinaswamy, Manoj K, Dalwadi, Udit, Yip, Calvin K, Burke, John E, Garcia, K Christopher, Grishin, Nick V, Adams, Paul D, Read, Randy J, Baker, David

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Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14) von Kinch, Lisa N., Pei, Jimin, Kryshtafovych, Andriy, Schaeffer, R. Dustin, Grishin, Nick V.

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ECOD: new developments in the evolutionary classification of domains von Schaeffer, R Dustin, Liao, Yuxing, Cheng, Hua, Grishin, Nick V

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DPAM: A domain parser for AlphaFold models von Zhang, Jing, Schaeffer, R. Dustin, Durham, Jesse, Cong, Qian, Grishin, Nick V.

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Exploring the possibility space: taking stock of the diverse capabilities and gaps in integrated assessment models von Keppo, I, Butnar, I, Bauer, N, Caspani, M, Edelenbosch, O, Emmerling, J, Fragkos, P, Guivarch, C, Harmsen, M, Lefèvre, J, Le Gallic, T, Leimbach, M, McDowall, W, Mercure, J-F, Schaeffer, R, Trutnevyte, E, Wagner, F

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A Fifth of the Protein World: Rossmann-like Proteins as an Evolutionarily Successful Structural unit von Medvedev, Kirill E., Kinch, Lisa N., Dustin Schaeffer, R., Pei, Jimin, Grishin, Nick V.

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Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways von Medvedev, Kirill E, Kinch, Lisa N, Schaeffer, R Dustin, Grishin, Nick V

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DrugDomain: The evolutionary context of drugs and small molecules bound to domains von Medvedev, Kirill E., Schaeffer, R. Dustin, Grishin, Nick V.

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ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2 von Schaeffer, R Dustin, Zhang, Jing, Medvedev, Kirill E, Kinch, Lisa N, Cong, Qian, Grishin, Nick V

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Cost overruns and delays in energy megaprojects: How big is big enough? von Callegari, C., Szklo, A., Schaeffer, R.

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Methicillin resistance alters the biofilm phenotype and attenuates virulence in Staphylococcus aureus device-associated infections von Pozzi, Clarissa, Waters, Elaine M, Rudkin, Justine K, Schaeffer, Carolyn R, Lohan, Amanda J, Tong, Pin, Loftus, Brendan J, Pier, Gerald B, Fey, Paul D, Massey, Ruth C, O'Gara, James P

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Constraints on Dark Matter interactions from structure formation: damping lengths von Boehm, C., Schaeffer, R.

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Bridging the Gap between Sequence and Structure Classifications of Proteins with AlphaFold Models von Pei, Jimin, Andreeva, Antonina, Chuguransky, Sara, Lázaro Pinto, Beatriz, Paysan-Lafosse, Typhaine, Dustin Schaeffer, R., Bateman, Alex, Cong, Qian, Grishin, Nick V.

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Pathogenic mutation hotspots in protein kinase domain structure von Medvedev, Kirill E., Schaeffer, R. Dustin, Pei, Jimin, Grishin, Nick V.

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Manual classification strategies in the ECOD database von Cheng, Hua, Liao, Yuxing, Schaeffer, R. Dustin, Grishin, Nick V.

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Assessment of domain interactions in the fourteenth round of the Critical Assessment of Structure Prediction (CASP14) von Schaeffer, R. Dustin, Kinch, Lisa, Kryshtafovych, Andriy, Grishin, Nick V.

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ECOD: integrating classifications of protein domains from experimental and predicted structures von Schaeffer, R Dustin, Medvedev, Kirill E, Andreeva, Antonina, Chuguransky, Sara Rocio, Pinto, Beatriz Lazaro, Zhang, Jing, Cong, Qian, Bateman, Alex, Grishin, Nick V

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Classification of domains in predicted structures of the human proteome von Schaeffer, R Dustin, Zhang, Jing, Kinch, Lisa N, Pei, Jimin, Cong, Qian, Grishin, Nick V

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