MitoFish, MitoAnnotator, and MiFish Pipeline: Updates in 10 Years von Zhu, Tao, Sato, Yukuto, Sado, Tetsuya, Miya, Masaki, Iwasaki, Wataru

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Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling von Inoue, Jun, Sato, Yukuto, Sinclair, Robert, Tsukamoto, Katsumi, Nishida, Mutsumi

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Population admixtures in medaka inferred by multiple arbitrary amplicon sequencing von Fujimoto, Shingo, Yaguchi, Hajime, Myosho, Taijun, Aoyama, Hiroaki, Sato, Yukuto, Kimura, Ryosuke

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Environmental DNA metabarcoding to detect pathogenic Leptospira and associated organisms in leptospirosis-endemic areas of Japan von Sato, Yukuto, Mizuyama, Masaru, Sato, Megumi, Minamoto, Toshifumi, Kimura, Ryosuke, Toma, Claudia

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Environmental DNA enables detection of terrestrial mammals from forest pond water von Ushio, Masayuki, Fukuda, Hisato, Inoue, Toshiki, Makoto, Kobayashi, Kishida, Osamu, Sato, Keiichi, Murata, Koichi, Nikaido, Masato, Sado, Tetsuya, Sato, Yukuto, Takeshita, Masamichi, Iwasaki, Wataru, Yamanaka, Hiroki, Kondoh, Michio, Miya, Masaki

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Animal-sourced model of human norovirus infection predicted using environmental DNA metabarcoding analysis von Sato, Yukuto, Yasuda, Jun, Sakurai, Masahiro

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Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals von Nagasaki, Masao, Yasuda, Jun, Katsuoka, Fumiki, Nariai, Naoki, Kojima, Kaname, Kawai, Yosuke, Yamaguchi-Kabata, Yumi, Yokozawa, Junji, Danjoh, Inaho, Saito, Sakae, Sato, Yukuto, Mimori, Takahiro, Tsuda, Kaoru, Saito, Rumiko, Pan, Xiaoqing, Nishikawa, Satoshi, Ito, Shin, Kuroki, Yoko, Tanabe, Osamu, Fuse, Nobuo, Kuriyama, Shinichi, Kiyomoto, Hideyasu, Hozawa, Atsushi, Minegishi, Naoko, Douglas Engel, James, Kinoshita, Kengo, Kure, Shigeo, Yaegashi, Nobuo, Yamamoto, Masayuki

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The emergence of a cryptic lineage and cytonuclear discordance through past hybridization in the Japanese fire-bellied newt, Cynops pyrrhogaster (Amphibia: Urodela) von Tominaga, Atsushi, Yoshikawa, Natsuhiko, Matsui, Masafumi, Nagata, Nobuaki, Sato, Yukuto

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Seasonal diet partition among top predators of a small island, Iriomote Island in the Ryukyu Archipelago, Japan von Tobe, Alisa, Sato, Yukuto, Wachi, Nakatada, Nakanishi, Nozomi, Izawa, Masako

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Understanding leptospirosis eco-epidemiology by environmental DNA metabarcoding of irrigation water from two agro-ecological regions of Sri Lanka von Gamage, Chandika D, Sato, Yukuto, Kimura, Ryosuke, Yamashiro, Tetsu, Toma, Claudia

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Omics profiles of fecal and oral microbiota change in irritable bowel syndrome patients with diarrhea and symptom exacerbation von Tanaka, Yukari, Yamashita, Riu, Kawashima, Junko, Mori, Hiroshi, Kurokawa, Ken, Fukuda, Shinji, Gotoh, Yasuhiro, Nakamura, Keiji, Hayashi, Tetsuya, Kasahara, Yoshiyuki, Sato, Yukuto, Fukudo, Shin

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Evolutionary origin of the Scombridae (tunas and mackerels): members of a paleogene adaptive radiation with 14 other pelagic fish families von Miya, Masaki, Friedman, Matt, Satoh, Takashi P, Takeshima, Hirohiko, Sado, Tetsuya, Iwasaki, Wataru, Yamanoue, Yusuke, Nakatani, Masanori, Mabuchi, Kohji, Inoue, Jun G, Poulsen, Jan Yde, Fukunaga, Tsukasa, Sato, Yukuto, Nishida, Mutsumi

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Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes von Yamagishi, Junya, Sato, Yukuto, Shinozaki, Natsuko, Ye, Bin, Tsuboi, Akito, Nagasaki, Masao, Yamashita, Riu

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HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data von Nariai, Naoki, Kojima, Kaname, Saito, Sakae, Mimori, Takahiro, Sato, Yukuto, Kawai, Yosuke, Yamaguchi-Kabata, Yumi, Yasuda, Jun, Nagasaki, Masao

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Inter-Individual Differences in the Oral Bacteriome Are Greater than Intra-Day Fluctuations in Individuals von Sato, Yukuto, Yamagishi, Junya, Yamashita, Riu, Shinozaki, Natsuko, Ye, Bin, Yamada, Takuji, Yamamoto, Masayuki, Nagasaki, Masao, Tsuboi, Akito

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Development and evaluation of a loop-mediated isothermal amplification (LAMP) assay for quick identification of the Japanese salamander Hynobius tokyoensis von Suzuki, Tomoya, Nishikawa, Kanto, Sato, Yukuto, Toda, Mamoru

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Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication von Sato, Yukuto, Hashiguchi, Yasuyuki, Nishida, Mutsumi

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Further notice of omics profiles of fecal and oral microbiota change in irritable bowel syndrome patients with diarrhea and symptom exacerbation von Tanaka, Yukari, Yamashita, Riu, Kawashima, Junko, Mori, Hiroshi, Kurokawa, Ken, Fukuda, Shinji, Gotoh, Yasuhiro, Nakamura, Keiji, Hayashi, Tetsuya, Kasahara, Yoshiyuki, Sato, Yukuto, Fukudo, Shin

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Analysis of human clinical and environmental Leptospira to elucidate the eco-epidemiology of leptospirosis in Yaeyama, subtropical Japan von Sato, Yukuto, Hermawan, Idam, Kakita, Tetsuya, Okano, Sho, Imai, Hideyuki, Nagai, Hiroto, Kimura, Ryosuke, Yamashiro, Tetsu, Kajita, Tadashi, Toma, Claudia

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A systematic survey of environmental DNA in Palau's lakes and waterfalls reveals an increase in Leptospira levels after flooding von Sato, Yukuto, Tsurui-Sato, Kaori, Uchima, Yoichiro, Udui, Cheryl-Ann, Lorin, Osiro, Rengulbai, Kashgar, Toma, Claudia, Suzuki, Ryo

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