annotatr: genomic regions in context von Cavalcante, Raymond G, Sartor, Maureen A

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Machine learning approaches and databases for prediction of drug–target interaction: a survey paper von Bagherian, Maryam, Sabeti, Elyas, Wang, Kai, Sartor, Maureen A, Nikolovska-Coleska, Zaneta, Najarian, Kayvan

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ER-stress-induced transcriptional regulation increases protein synthesis leading to cell death von Han, Jaeseok, Back, Sung Hoon, Hur, Junguk, Lin, Yu-Hsuan, Gildersleeve, Robert, Shan, Jixiu, Yuan, Celvie L., Krokowski, Dawid, Wang, Shiyu, Hatzoglou, Maria, Kilberg, Michael S., Sartor, Maureen A., Kaufman, Randal J.

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MethylSig: a whole genome DNA methylation analysis pipeline von Park, Yongseok, Figueroa, Maria E, Rozek, Laura S, Sartor, Maureen A

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PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data von Zhang, Yanxiao, Lin, Yu-Hsuan, Johnson, Timothy D, Rozek, Laura S, Sartor, Maureen A

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MicroRNA-320 Is Involved in the Regulation of Cardiac Ischemia/Reperfusion Injury by Targeting Heat-Shock Protein 20 von REN, Xiao-Ping, JINGHAI WU, XIAOHONG WANG, SARTOR, Maureen A, JIANG QIAN, JONES, Keith, NICOLAOU, Persoulla, PRITCHARD, Tracy J, FAN, Guo-Chang

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A Mouse Model of X-linked Intellectual Disability Associated with Impaired Removal of Histone Methylation von Iwase, Shigeki, Brookes, Emily, Agarwal, Saurabh, Badeaux, Aimee I., Ito, Hikaru, Vallianatos, Christina N., Tomassy, Giulio Srubek, Kasza, Tomas, Lin, Grace, Thompson, Andrew, Gu, Lei, Kwan, Kenneth Y., Chen, Chinfei, Sartor, Maureen A., Egan, Brian, Xu, Jun, Shi, Yang

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Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data von Karnovsky, Alla, Weymouth, Terry, Hull, Tim, Tarcea, V. Glenn, Scardoni, Giovanni, Laudanna, Carlo, Sartor, Maureen A., Stringer, Kathleen A., Jagadish, H. V., Burant, Charles, Athey, Brian, Omenn, Gilbert S.

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LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data von Sartor, Maureen A., Leikauf, George D., Medvedovic, Mario

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Epigenetics: relevance and implications for public health von Rozek, Laura S, Dolinoy, Dana C, Sartor, Maureen A, Omenn, Gilbert S

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Somatic expression of piRNA and associated machinery in the mouse identifies short, tissue-specific piRNA von Perera, Bambarendage P.U., Tsai, Zing Tsung-Yeh, Colwell, Mathia L., Jones, Tamara R., Goodrich, Jaclyn M., Wang, Kai, Sartor, Maureen A., Faulk, Christopher, Dolinoy, Dana C.

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Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data von Qin, Tingting, Lee, Christopher, Li, Shiting, Cavalcante, Raymond G, Orchard, Peter, Yao, Heming, Zhang, Hanrui, Wang, Shuze, Patil, Snehal, Boyle, Alan P, Sartor, Maureen A

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Heterogeneity of Human Breast Stem and Progenitor Cells as Revealed by Transcriptional Profiling von Colacino, Justin A., Azizi, Ebrahim, Brooks, Michael D., Harouaka, Ramdane, Fouladdel, Shamileh, McDermott, Sean P., Lee, Michael, Hill, David, Madden, Julie, Boerner, Julie, Cote, Michele L., Sartor, Maureen A., Rozek, Laura S., Wicha, Max S.

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Single-Cell Analysis of the Gene Expression Effects of Developmental Lead (Pb) Exposure on the Mouse Hippocampus von Bakulski, Kelly M, Dou, John F, Thompson, Robert C, Lee, Christopher, Middleton, Lauren Y, Perera, Bambarendage P U, Ferris, Sean P, Jones, Tamara R, Neier, Kari, Zhou, Xiang, Sartor, Maureen A, Hammoud, Saher S, Dolinoy, Dana C, Colacino, Justin A

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Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments von Sartor, Maureen A, Tomlinson, Craig R, Wesselkamper, Scott C, Sivaganesan, Siva, Leikauf, George D, Medvedovic, Mario

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Translational toxicoepigenetic Meta-Analyses identify homologous gene DNA methylation reprogramming following developmental phthalate and lead exposure in mouse and human offspring von Petroff, Rebekah L., Dolinoy, Dana C., Wang, Kai, Montrose, Luke, Padmanabhan, Vasantha, Peterson, Karen E., Ruden, Douglas M., Sartor, Maureen A., Svoboda, Laurie K., Téllez-Rojo, Martha M., Goodrich, Jaclyn M.

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Sex and tissue-specificity of piRNA regulation in adult mice following perinatal lead (Pb) exposure von Perera, Bambarendage P U, Wang, Kai, Wang, Dongyue, Chen, Kathleen, Dewald, Alisa, Sriram, Swati, Goodrich, Jaclyn M, Svoboda, Laurie K, Sartor, Maureen A, Dolinoy, Dana C

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Novel Epigenetic Biomarkers Mediating Bisphenol A Exposure and Metabolic Phenotypes in Female Mice von Anderson, Olivia S, Kim, Jung H, Peterson, Karen E, Sanchez, Brisa N, Sant, Karilyn E, Sartor, Maureen A, Weinhouse, Caren, Dolinoy, Dana C

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LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types von Kim, Jung H, Karnovsky, Alla, Mahavisno, Vasudeva, Weymouth, Terry, Pande, Manjusha, Dolinoy, Dana C, Rozek, Laura S, Sartor, Maureen A

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Molecular Tumor Subtypes of HPV-Positive Head and Neck Cancers: Biological Characteristics and Implications for Clinical Outcomes von Qin, Tingting, Li, Shiting, Henry, Leanne E., Liu, Siyu, Sartor, Maureen A.

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