Large scale comparison of gene expression levels by microarrays and RNAseq using TCGA data von Guo, Yan, Sheng, Quanhu, Li, Jiang, Ye, Fei, Samuels, David C, Shyr, Yu

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Genome measures used for quality control are dependent on gene function and ancestry von Wang, Jing, Raskin, Leon, Samuels, David C, Shyr, Yu, Guo, Yan

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Architectures and accuracy of artificial neural network for disease classification from omics data von Yu, Hui, Samuels, David C, Zhao, Ying-Yong, Guo, Yan

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Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis von Guo, Yan, Dai, Yulin, Yu, Hui, Zhao, Shilin, Samuels, David C., Shyr, Yu

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Homeostatic Responses Regulate Selfish Mitochondrial Genome Dynamics in C. elegans von Gitschlag, Bryan L., Kirby, Cait S., Samuels, David C., Gangula, Rama D., Mallal, Simon A., Patel, Maulik R.

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Identification of serum metabolites associating with chronic kidney disease progression and anti-fibrotic effect of 5-methoxytryptophan von Chen, Dan-Qian, Cao, Gang, Chen, Hua, Argyopoulos, Christos P., Yu, Hui, Su, Wei, Chen, Lin, Samuels, David C., Zhuang, Shougang, Bayliss, George P., Zhao, Shilin, Yu, Xiao-Yong, Vaziri, Nosratola D., Wang, Ming, Liu, Dan, Mao, Jia-Rong, Ma, Shi-Xing, Zhao, Jin, Zhang, Yuan, Shang, You-Quan, Kang, Huining, Ye, Fei, Cheng, Xiao-Hong, Li, Xiang-Ri, Zhang, Li, Meng, Mei-Xia, Guo, Yan, Zhao, Ying-Yong

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Pathogenic Mitochondrial DNA Mutations Are Common in the General Population von Elliott, Hannah R., Samuels, David C., Eden, James A., Relton, Caroline L., Chinnery, Patrick F.

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Strategies for processing and quality control of Illumina genotyping arrays von Zhao, Shilin, Jing, Wang, Samuels, David C, Sheng, Quanghu, Shyr, Yu, Guo, Yan

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Recurrent tissue-specific mtDNA mutations are common in humans von Samuels, David C, Li, Chun, Li, Bingshan, Song, Zhuo, Torstenson, Eric, Boyd Clay, Hayley, Rokas, Antonis, Thornton-Wells, Tricia A, Moore, Jason H, Hughes, Tia M, Hoffman, Robert D, Haines, Jonathan L, Murdock, Deborah G, Mortlock, Douglas P, Williams, Scott M

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Finding the lost treasures in exome sequencing data von Samuels, David C, Han, Leng, Li, Jiang, Quanghu, Sheng, Clark, Travis A, Shyr, Yu, Guo, Yan

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The effect of strand bias in Illumina short-read sequencing data von Guo, Yan, Li, Jiang, Li, Chung-I, Long, Jirong, Samuels, David C, Shyr, Yu

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OSBPL10, RXRA and lipid metabolism confer African-ancestry protection against dengue haemorrhagic fever in admixed Cubans von Sierra, Beatriz, Triska, Petr, Soares, Pedro, Garcia, Gissel, Perez, Ana B, Aguirre, Eglys, Oliveira, Marisa, Cavadas, Bruno, Regnault, Béatrice, Alvarez, Mayling, Ruiz, Didye, Samuels, David C, Sakuntabhai, Anavaj, Pereira, Luisa, Guzman, Maria G

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Comparing Phylogeny and the Predicted Pathogenicity of Protein Variations Reveals Equal Purifying Selection across the Global Human mtDNA Diversity von Pereira, Luísa, Soares, Pedro, Radivojac, Predrag, Li, Biao, Samuels, David C.

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The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data von Guo, Yan, Zhao, Shilin, Sheng, Quanhu, Samuels, David C, Shyr, Yu

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Mitochondrial aging is accelerated by anti-retroviral therapy through the clonal expansion of mtDNA mutations von Chinnery, Patrick F, Payne, Brendan A I, Wilson, Ian J, Hateley, Charlotte A, Horvath, Rita, Santibanez-Koref, Mauro, Samuels, David C, Price, D Ashley

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MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis von Guo, Yan, Li, Jiang, Li, Chung-I, Shyr, Yu, Samuels, David C

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Detection of distant relatedness in biobanks to identify undiagnosed cases of Mendelian disease as applied to Long QT syndrome von Lancaster, Megan C., Chen, Hung-Hsin, Shoemaker, M. Benjamin, Fleming, Matthew R., Strickland, Teresa L., Baker, James T., Evans, Grahame F., Polikowsky, Hannah G., Samuels, David C., Huff, Chad D., Roden, Dan M., Below, Jennifer E.

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MitoTrace: A Computational Framework for Analyzing Mitochondrial Variation in Single-Cell RNA Sequencing Data von Wang, Mingqiang, Deng, Wankun, Samuels, David C, Zhao, Zhongming, Simon, Lukas M

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A reduction of mitochondrial DNA molecules during embryogenesis explains the rapid segregation of genotypes von de Sousa Lopes, Susana Chuva, Chinnery, Patrick F, Dahl, Hans-Henrik M, Cree, Lynsey M, Rajasimha, Harsha Karur, Wonnapinij, Passorn, Mann, Jeffrey R, Samuels, David C

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Evaluating purifying selection in the mitochondrial DNA of various mammalian species von Soares, Pedro, Abrantes, Diogo, Rito, Teresa, Thomson, Noel, Radivojac, Predrag, Li, Biao, Macaulay, Vincent, Samuels, David C, Pereira, Luísa

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