Patient-Specific Circulating Tumor DNA Detection during Neoadjuvant Chemotherapy in Triple-Negative Breast Cancer von Riva, Francesca, Bidard, Francois-Clement, Houy, Alexandre, Saliou, Adrien, Madic, Jordan, Rampanou, Aurore, Hego, Caroline, Milder, Maud, Cottu, Paul, Sablin, Marie-Paule, Vincent-Salomon, Anne, Lantz, Olivier, Stern, Marc-Henri, Proudhon, Charlotte, Pierga, Jean-Yves

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A standardized gnotobiotic mouse model harboring a minimal 15-member mouse gut microbiota recapitulates SOPF/SPF phenotypes von Darnaud, Marion, De Vadder, Filipe, Bogeat, Pascaline, Boucinha, Lilia, Bulteau, Anne-Laure, Bunescu, Andrei, Couturier, Céline, Delgado, Ana, Dugua, Hélène, Elie, Céline, Mathieu, Alban, Novotná, Tereza, Ouattara, Djomangan Adama, Planel, Séverine, Saliou, Adrien, Šrůtková, Dagmar, Yansouni, Jennifer, Stecher, Bärbel, Schwarzer, Martin, Leulier, François, Tamellini, Andrea

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Multicenter evaluation of gut microbiome profiling by next-generation sequencing reveals major biases in partial-length metabarcoding approach von Roume, Hugo, Mondot, Stanislas, Saliou, Adrien, Le Fresne-Languille, Sophie, Doré, Joël

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A single workflow for multi-species blood transcriptomics von Orcel, Elody, Hage, Hayat, Taha, May, Boucher, Noémie, Chautard, Emilie, Courtois, Virginie, Saliou, Adrien

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Circulating tumor DNA as a non-invasive substitute to metastasis biopsy for tumor genotyping and personalized medicine in a prospective trial across all tumor types von Lebofsky, Ronald, Decraene, Charles, Bernard, Virginie, Kamal, Maud, Blin, Anthony, Leroy, Quentin, Rio Frio, Thomas, Pierron, Gaëlle, Callens, Céline, Bieche, Ivan, Saliou, Adrien, Madic, Jordan, Rouleau, Etienne, Bidard, François-Clément, Lantz, Olivier, Stern, Marc-Henri, Le Tourneau, Christophe, Pierga, Jean-Yves

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Comparison of DNA extraction methods for 16S rRNA gene sequencing in the analysis of the human gut microbiome von Elie, Céline, Perret, Magali, Hage, Hayat, Sentausa, Erwin, Hesketh, Amy, Louis, Karen, Fritah-Lafont, Asmaà, Leissner, Philippe, Vachon, Carole, Rostaing, Hervé, Reynier, Frédéric, Gervasi, Gaspard, Saliou, Adrien

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Exploring the gut microbiota in patients with pre-diabetes and treatment naïve diabetes type 2 - a pilot study von Gravdal, Kristin, Kirste, Katrine H, Grzelak, Krzysztofa, Kirubakaran, Graceline Tina, Leissner, Philippe, Saliou, Adrien, Casèn, Christina

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Circulating Tumor Cells and Circulating Tumor DNA Detection in Potentially Resectable Metastatic Colorectal Cancer: A Prospective Ancillary Study to the Unicancer Prodige-14 Trial von Bidard, François-Clément, Kiavue, Nicolas, Ychou, Marc, Cabel, Luc, Stern, Marc-Henri, Madic, Jordan, Saliou, Adrien, Rampanou, Aurore, Decraene, Charles, Bouché, Olivier, Rivoire, Michel, Ghiringhelli, François, Francois, Eric, Guimbaud, Rosine, Mineur, Laurent, Khemissa-Akouz, Faiza, Mazard, Thibault, Moussata, Driffa, Proudhon, Charlotte, Pierga, Jean-Yves, Stanbury, Trevor, Thézenas, Simon, Mariani, Pascale

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Interspecies comparison of the early transcriptomic changes associated with hepatitis B virus exposure in human and macaque immune cell populations von Roca Suarez, Armando Andres, Planel, Séverine, Grand, Xavier, Couturier, Céline, Tran, Trang, Porcheray, Fabrice, Becker, Jérémie, Reynier, Frédéric, Delgado, Ana, Cascales, Elodie, Peyrot, Loïc, Tamellini, Andrea, Saliou, Adrien, Elie, Céline, Baum, Chloé, Vuong, Bao Quoc, Testoni, Barbara, Roques, Pierre, Zoulim, Fabien, Hasan, Uzma, Chemin, Isabelle

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Concordance between Two Phenotypic Assays and Ultradeep Pyrosequencing for Determining HIV-1 Tropism von SALIOU, Adrien, DELOBEL, Pierre, DUBOIS, Martine, NICOT, Florence, RAYMOND, Stéphanie, CALVEZ, Vincent, MASQUELIER, Bernard, IZOPET, Jacques

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Minor HIV-1 variants with the K103N resistance mutation during intermittent efavirenz-containing antiretroviral therapy and virological failure von Delobel, Pierre, Saliou, Adrien, Nicot, Florence, Dubois, Martine, Trancart, Stéphanie, Tangre, Philippe, Aboulker, Jean-Pierre, Taburet, Anne-Marie, Molina, Jean-Michel, Massip, Patrice, Marchou, Bruno, Izopet, Jacques

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Multiple Hotspot Mutations Scanning by Single Droplet Digital PCR von Decraene, Charles, Silveira, Amanda B, Bidard, François-Clément, Vallée, Audrey, Michel, Marc, Melaabi, Samia, Vincent-Salomon, Anne, Saliou, Adrien, Houy, Alexandre, Milder, Maud, Lantz, Olivier, Ychou, Marc, Denis, Marc G, Pierga, Jean-Yves, Stern, Marc-Henri, Proudhon, Charlotte

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Towards personalized medicine: a scoping review of immunotherapy in sepsis von Slim, Marleen A, van Mourik, Niels, Bakkerus, Lieke, Fuller, Katherine, Acharya, Lydia, Giannidis, Tatiana, Dionne, Joanna C, Oczkowski, Simon J W, Netea, Mihai G, Pickkers, Peter, Giamarellos-Bourboulis, Evangelos J, Müller, Marcella C A, van der Poll, Tom, Wiersinga, W Joost, Vlaar, Alexander P J, van Vught, Lonneke A

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Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols von Forry, Samuel P., Servetas, Stephanie L., Kralj, Jason G., Soh, Keng, Hadjithomas, Michalis, Cano, Raul, Carlin, Martha, Amorim, Maria G. de, Auch, Benjamin, Bakker, Matthew G., Bartelli, Thais F., Bustamante, Juan P., Cassol, Ignacio, Chalita, Mauricio, Dias-Neto, Emmanuel, Duca, Aaron Del, Gohl, Daryl M., Kazantseva, Jekaterina, Haruna, Muyideen T., Menzel, Peter, Moda, Bruno S., Neuberger-Castillo, Lorieza, Nunes, Diana N., Patel, Isha R., Peralta, Rodrigo D., Saliou, Adrien, Schwarzer, Rolf, Sevilla, Samantha, Takenaka, Isabella K. T. M., Wang, Jeremy R., Knight, Rob, Gevers, Dirk, Jackson, Scott A.

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Draft Genome Sequences of 15 Bacterial Species Constituting the Stable Defined Intestinal Microbiota of the GM15 Gnotobiotic Mouse Model von Elie, Céline, Mathieu, Alban, Saliou, Adrien, Villain, Adrien, Darnaud, Marion, Leulier, François, Tamellini, Andrea

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Abstract 410: Exhaustive scanning of mutation hotspot regions using a new tool: The MHS-ddPCR von Decraene, Charles, Bidard, Francois-Clement, Belaabi, Samia, Rouleau, Etienne, Saliou, Adrien, Houy, Alexandre, Milder, Maud, Lantz, Olivier, Ychou, Marc, Pierga, Jean-Yves, Stern, Marc-Henri, Proudhon, Charlotte

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Position-specific automated processing of V3 env ultra-deep pyrosequencing data for predicting HIV-1 tropism von Jeanne, Nicolas, Saliou, Adrien, Carcenac, Romain, Lefebvre, Caroline, Dubois, Martine, Cazabat, Michelle, Nicot, Florence, Loiseau, Claire, Raymond, Stéphanie, Izopet, Jacques, Delobel, Pierre

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Evolution of HIV-1 quasispecies and coreceptor use in cell reservoirs of patients on suppressive antiretroviral therapy von Raymond, Stéphanie, Saliou, Adrien, Delobel, Pierre, Cazabat, Michelle, Pasquier, Christophe, Jeanne, Nicolas, Sauné, Karine, Massip, Patrice, Marchou, Bruno, Izopet, Jacques

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Abstract LB-76: Absolute single-molecule sensitive NGS by SPLITSEQ: a new ctDNA analysis tool von Lebofsky, Ronald, Madic, Jordan, Saliou, Adrien, Bidard, Francois-Clement, Lantz, Olivier, Stern, Marc-Henri, Pierga, Jean-Yves

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Frequency of CXCR4-using viruses in primary HIV-1 infections using ultra-deep pyrosequencing von RAYMOND, Stephanie, SALIOU, Adrien, NICOT, Florence, DELOBEL, Pierre, DUBOIS, Martine, CAZABAT, Michelle, SANDRES-SAUNE, Karine, MARCHOU, Bruno, MASSIP, Patrice, IZOPET, Jacques

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