An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray von Salas, Lucas A, Koestler, Devin C, Butler, Rondi A, Hansen, Helen M, Wiencke, John K, Kelsey, Karl T, Christensen, Brock C

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Enhanced cell deconvolution of peripheral blood using DNA methylation for high-resolution immune profiling von Salas, Lucas A., Zhang, Ze, Koestler, Devin C., Butler, Rondi A., Hansen, Helen M., Molinaro, Annette M., Wiencke, John K., Kelsey, Karl T., Christensen, Brock C.

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Cell-type deconvolution from DNA methylation: a review of recent applications von Titus, Alexander J, Gallimore, Rachel M, Salas, Lucas A, Christensen, Brock C

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MethylNet: an automated and modular deep learning approach for DNA methylation analysis von Levy, Joshua J, Titus, Alexander J, Petersen, Curtis L, Chen, Youdinghuan, Salas, Lucas A, Christensen, Brock C

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High pH-induced flocculation–sedimentation and effect of supernatant reuse on growth rate and lipid productivity of Scenedesmus obliquus and Chlorella vulgaris von Castrillo, M., Lucas-Salas, L.M., Rodríguez-Gil, C., Martínez, D.

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Hypertension Impacts Peripheral Blood Leukocyte Composition von Salas, Lucas A., Kelsey, Karl T.

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Genome-wide DNA methylation study in human placenta identifies novel loci associated with maternal smoking during pregnancy von Morales, Eva, Vilahur, Nadia, Salas, Lucas A, Motta, Valeria, Fernandez, Mariana F, Murcia, Mario, Llop, Sabrina, Tardon, Adonina, Fernandez-Tardon, Guillermo, Santa-Marina, Loreto, Gallastegui, Mara, Bollati, Valentina, Estivill, Xavier, Olea, Nicolas, Sunyer, Jordi, Bustamante, Mariona

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Recalibrate concepts of epigenetic aging clocks in human health von Zhang, Ze, Christensen, Brock C, Salas, Lucas A

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Detailed immune profiling in pediatric Crohn's disease using methylation cytometry von Reynolds, Samuel R., Salas, Lucas A., Chen, Ji-Qing, Christensen, Brock C.

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Associations in cell type-specific hydroxymethylation and transcriptional alterations of pediatric central nervous system tumors von Lee, Min Kyung, Azizgolshani, Nasim, Zhang, Ze, Perreard, Laurent, Kolling, Fred W., Nguyen, Lananh N., Zanazzi, George J., Salas, Lucas A., Christensen, Brock C.

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Tumor microenvironment deconvolution identifies cell-type-independent aberrant DNA methylation and gene expression in prostate cancer von Reynolds, Samuel R, Zhang, Ze, Salas, Lucas A, Christensen, Brock C

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HiTIMED: hierarchical tumor immune microenvironment epigenetic deconvolution for accurate cell type resolution in the tumor microenvironment using tumor-type-specific DNA methylati... von Zhang, Ze, Wiencke, John K, Kelsey, Karl T, Koestler, Devin C, Christensen, Brock C, Salas, Lucas A

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Systematic evaluation and validation of reference and library selection methods for deconvolution of cord blood DNA methylation data von Gervin, Kristina, Salas, Lucas A, Bakulski, Kelly M, van Zelm, Menno C, Koestler, Devin C, Wiencke, John K, Duijts, Liesbeth, Moll, Henriëtte A, Kelsey, Karl T, Kobor, Michael S, Lyle, Robert, Christensen, Brock C, Felix, Janine F, Jones, Meaghan J

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Extensive epigenomic dysregulation is a hallmark of homologous recombination deficiency in triple-negative breast cancer von Chen, Youdinghuan, Salas, Lucas A, Marotti, Jonathan D, Jenkins, Nicole P, Cheng, Chao, Miller, Todd W, Kettenbach, Arminja N, Christensen, Brock C

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Maternal swimming pool exposure during pregnancy in relation to birth outcomes and cord blood DNA methylation among private well users von Salas, Lucas A., Baker, Emily R., Nieuwenhuijsen, Mark J., Marsit, Carmen J., Christensen, Brock C., Karagas, Margaret R.

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Deciphering the role of immune cell composition in epigenetic age acceleration: Insights from cell‐type deconvolution applied to human blood epigenetic clocks von Zhang, Ze, Reynolds, Samuel R., Stolrow, Hannah G., Chen, Ji‐Qing, Christensen, Brock C., Salas, Lucas A.

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Effects of dilution rate and water reuse on biomass and lipid production of Scenedesmus obliquus in a two-stage novel photobioreactor von Lucas-Salas, L.M., Castrillo, M., Martínez, D.

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Application of Novel Breast Biospecimen Cell-Type Adjustment Identifies Shared DNA Methylation Alterations in Breast Tissue and Milk with Breast Cancer-Risk Factors von Muse, Meghan E, Carroll, Connolly D, Salas, Lucas A, Karagas, Margaret R, Christensen, Brock C

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Genome-Scale DNA Methylation Analysis Identifies Repeat Element Alterations that Modulate the Genomic Stability of Melanocytic Nevi von Muse, Meghan E., Bergman, Drew T., Salas, Lucas A., Tom, Lisa N., Tan, Jean-Marie, Laino, Antonia, Lambie, Duncan, Sturm, Richard A., Schaider, Helmut, Soyer, H. Peter, Christensen, Brock C., Stark, Mitchell S.

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Genome-Scale Methylation Analysis Identifies Immune Profiles and Age Acceleration Associations with Bladder Cancer Outcomes von Chen, Ji-Qing, Salas, Lucas A, Wiencke, John K, Koestler, Devin C, Molinaro, Annette M, Andrew, Angeline S, Seigne, John D, Karagas, Margaret R, Kelsey, Karl T, Christensen, Brock C

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