Boolean implication analysis of single-cell data predicts retinal cell type markers von Subramanian, Rohan, Sahoo, Debashis

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Hoxb5 marks long-term haematopoietic stem cells and reveals a homogenous perivascular niche von Chen, James Y., Miyanishi, Masanori, Wang, Sean K., Yamazaki, Satoshi, Sinha, Rahul, Kao, Kevin S., Seita, Jun, Sahoo, Debashis, Nakauchi, Hiromitsu, Weissman, Irving L.

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Fungal effectors, the double edge sword of phytopathogens von Pradhan, Amrita, Ghosh, Srayan, Sahoo, Debashis, Jha, Gopaljee

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CDX2 as a Prognostic Biomarker in Stage II and Stage III Colon Cancer von Dalerba, Piero, Sahoo, Debashis, Paik, Soonmyung, Guo, Xiangqian, Yothers, Greg, Song, Nan, Wilcox-Fogel, Nate, Forgó, Erna, Rajendran, Pradeep S, Miranda, Stephen P, Hisamori, Shigeo, Hutchison, Jacqueline, Kalisky, Tomer, Qian, Dalong, Wolmark, Norman, Fisher, George A, van de Rijn, Matt, Clarke, Michael F

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Drug repurposing screens identify chemical entities for the development of COVID-19 interventions von Bakowski, Malina A., Beutler, Nathan, Wolff, Karen C., Kirkpatrick, Melanie G., Chen, Emily, Nguyen, Tu-Trinh H., Riva, Laura, Shaabani, Namir, Parren, Mara, Ricketts, James, Gupta, Anil K., Pan, Kastin, Kuo, Peiting, Fuller, MacKenzie, Garcia, Elijah, Teijaro, John R., Yang, Linlin, Sahoo, Debashis, Chi, Victor, Huang, Edward, Vargas, Natalia, Roberts, Amanda J., Das, Soumita, Ghosh, Pradipta, Woods, Ashley K., Joseph, Sean B., Hull, Mitchell V., Schultz, Peter G., Burton, Dennis R., Chatterjee, Arnab K., McNamara, Case W., Rogers, Thomas F.

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Identification of the Human Skeletal Stem Cell von Chan, Charles K.F., Gulati, Gunsagar S., Sinha, Rahul, Tompkins, Justin Vincent, Lopez, Michael, Carter, Ava C., Ransom, Ryan C., Reinisch, Andreas, Wearda, Taylor, Murphy, Matthew, Brewer, Rachel E., Koepke, Lauren S., Marecic, Owen, Manjunath, Anoop, Seo, Eun Young, Leavitt, Tripp, Lu, Wan-Jin, Nguyen, Allison, Conley, Stephanie D., Salhotra, Ankit, Ambrosi, Thomas H., Borrelli, Mimi R., Siebel, Taylor, Chan, Karen, Schallmoser, Katharina, Seita, Jun, Sahoo, Debashis, Goodnough, Henry, Bishop, Julius, Gardner, Michael, Majeti, Ravindra, Wan, Derrick C., Goodman, Stuart, Weissman, Irving L., Chang, Howard Y., Longaker, Michael T.

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Adult stem cell-derived complete lung organoid models emulate lung disease in COVID-19 von Tindle, Courtney, Fuller, MacKenzie, Fonseca, Ayden, Taheri, Sahar, Ibeawuchi, Stella-Rita, Beutler, Nathan, Katkar, Gajanan Dattatray, Claire, Amanraj, Castillo, Vanessa, Hernandez, Moises, Russo, Hana, Duran, Jason, Crotty Alexander, Laura E, Tipps, Ann, Lin, Grace, Thistlethwaite, Patricia A, Chattopadhyay, Ranajoy, Rogers, Thomas F, Sahoo, Debashis, Ghosh, Pradipta, Das, Soumita

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Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease von Sahoo, Debashis, Swanson, Lee, Sayed, Ibrahim M., Katkar, Gajanan D., Ibeawuchi, Stella-Rita, Mittal, Yash, Pranadinata, Rama F., Tindle, Courtney, Fuller, Mackenzie, Stec, Dominik L., Chang, John T., Sandborn, William J., Das, Soumita, Ghosh, Pradipta

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Human bone marrow hematopoietic stem cells are increased in frequency and myeloid-biased with age von Pang, Wendy W, Price, Elizabeth A, Sahoo, Debashis, Beerman, Isabel, Maloney, William J, Rossi, Derrick J, Schrier, Stanley L, Weissman, Irving L

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Quantitative mRNA expression measurement at home von Pandey, Sonalisa, McCoy, Sara Safa, Stobdan, Tsering, Sahoo, Debashis

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A Boolean approach for novel hypoxia-related gene discovery von Stobdan, Tsering, Sahoo, Debashis, Haddad, Gabriel G

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The PVT1 lncRNA is a novel epigenetic enhancer of MYC, and a promising risk-stratification biomarker in colorectal cancer von Shigeyasu, Kunitoshi, Toden, Shusuke, Ozawa, Tsuyoshi, Matsuyama, Takatoshi, Nagasaka, Takeshi, Ishikawa, Toshiaki, Sahoo, Debashis, Ghosh, Pradipta, Uetake, Hiroyuki, Fujiwara, Toshiyoshi, Goel, Ajay

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Unbiased Boolean analysis of public gene expression data for cell cycle gene identification von Dabydeen, Sarah A, Desai, Arshad, Sahoo, Debashis

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miR-221 Targets QKI to Enhance the Tumorigenic Capacity of Human Colorectal Cancer Stem Cells von Mukohyama, Junko, Isobe, Taichi, Hu, Qingjiang, Hayashi, Takanori, Watanabe, Takashi, Maeda, Masao, Yanagi, Hisano, Qian, Xin, Yamashita, Kimihiro, Minami, Hironobu, Mimori, Koshi, Sahoo, Debashis, Kakeji, Yoshihiro, Suzuki, Akira, Dalerba, Piero, Shimono, Yohei

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Artificial intelligence-guided discovery of gastric cancer continuum von Vo, Daniella, Ghosh, Pradipta, Sahoo, Debashis

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The genome sequence of the colonial chordate, Botryllus schlosseri von Voskoboynik, Ayelet, Neff, Norma F, Sahoo, Debashis, Newman, Aaron M, Pushkarev, Dmitry, Koh, Winston, Passarelli, Benedetto, Fan, H Christina, Mantalas, Gary L, Palmeri, Karla J, Ishizuka, Katherine J, Gissi, Carmela, Griggio, Francesca, Ben-Shlomo, Rachel, Corey, Daniel M, Penland, Lolita, White, 3rd, Richard A, Weissman, Irving L, Quake, Stephen R

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Rescue of Alzheimer’s disease phenotype in a mouse model by transplantation of wild-type hematopoietic stem and progenitor cells von Mishra, Priyanka, Silva, Alexander, Sharma, Jay, Nguyen, Jacqueline, Pizzo, Donald P., Hinz, Denise, Sahoo, Debashis, Cherqui, Stephanie

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Single-cell dissection of transcriptional heterogeneity in human colon tumors von Dalerba, Piero, Kalisky, Tomer, Sahoo, Debashis, Rajendran, Pradeep S, Rothenberg, Michael E, Leyrat, Anne A, Sim, Sopheak, Okamoto, Jennifer, Johnston, Darius M, Qian, Dalong, Zabala, Maider, Bueno, Janet, Neff, Norma F, Wang, Jianbin, Shelton, Andrew A, Visser, Brendan, Hisamori, Shigeo, Shimono, Yohei, van de Wetering, Marc, Clevers, Hans, Clarke, Michael F, Quake, Stephen R

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Boolean implication analysis unveils candidate universal relationships in microbiome data von Vo, Daniella, Singh, Shayal Charisma, Safa, Sara, Sahoo, Debashis

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Enhanced mitochondrial fission suppresses signaling and metastasis in triple-negative breast cancer von Humphries, Brock A, Cutter, Alyssa C, Buschhaus, Johanna M, Chen, Yu-Chih, Qyli, Tonela, Palagama, Dilrukshika S W, Eckley, Samantha, Robison, Tanner H, Bevoor, Avinash, Chiang, Benjamin, Haley, Henry R, Sahoo, Saswat, Spinosa, Phillip C, Neale, Dylan B, Boppisetti, Jagadish, Sahoo, Debashis, Ghosh, Pradipta, Lahann, Joerg, Ross, Brian D, Yoon, Eusik, Luker, Kathryn E, Luker, Gary D

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