Analysis methods for studying the 3D architecture of the genome von Ay, Ferhat, Noble, William S

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Motif-based analysis of large nucleotide data sets using MEME-ChIP von Ma, Wenxiu, Noble, William S, Bailey, Timothy L

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Epiphany: predicting Hi-C contact maps from 1D epigenomic signals von Yang, Rui, Das, Arnav, Gao, Vianne R, Karbalayghareh, Alireza, Noble, William S, Bilmes, Jeffrey A, Leslie, Christina S

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Technical advances in proteomics: new developments in data-independent acquisition [version 1; peer review: 3 approved] von Hu, Alex, Noble, William S, Wolf-Yadlin, Alejandro

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Escape from X inactivation varies in mouse tissues von Berletch, Joel B, Ma, Wenxiu, Yang, Fan, Shendure, Jay, Noble, William S, Disteche, Christine M, Deng, Xinxian

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Bipartite structure of the inactive mouse X chromosome von Deng, Xinxian, Ma, Wenxiu, Ramani, Vijay, Hill, Andrew, Yang, Fan, Ay, Ferhat, Berletch, Joel B, Blau, Carl Anthony, Shendure, Jay, Duan, Zhijun, Noble, William S, Disteche, Christine M

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Dynamics of genome reorganization during human cardiogenesis reveal an RBM20-dependent splicing factory von Bertero, Alessandro, Fields, Paul A., Ramani, Vijay, Bonora, Giancarlo, Yardimci, Galip G., Reinecke, Hans, Pabon, Lil, Noble, William S., Shendure, Jay, Murry, Charles E.

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Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors von Wang, Jie, Zhuang, Jiali, Iyer, Sowmya, Lin, XinYing, Whitfield, Troy W, Greven, Melissa C, Pierce, Brian G, Dong, Xianjun, Kundaje, Anshul, Cheng, Yong, Rando, Oliver J, Birney, Ewan, Myers, Richard M, Noble, William S, Snyder, Michael, Weng, Zhiping

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The lncRNA Firre anchors the inactive X chromosome to the nucleolus by binding CTCF and maintains H3K27me3 methylation von Yang, Fan, Deng, Xinxian, Ma, Wenxiu, Berletch, Joel B, Rabaia, Natalia, Wei, Gengze, Moore, James M, Filippova, Galina N, Xu, Jun, Liu, Yajuan, Noble, William S, Shendure, Jay, Disteche, Christine M

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Measuring the reproducibility and quality of Hi-C data von Yardımcı, Galip Gürkan, Ozadam, Hakan, Sauria, Michael E G, Ursu, Oana, Yan, Koon-Kiu, Yang, Tao, Chakraborty, Abhijit, Kaul, Arya, Lajoie, Bryan R, Song, Fan, Zhan, Ye, Ay, Ferhat, Gerstein, Mark, Kundaje, Anshul, Li, Qunhua, Taylor, James, Yue, Feng, Dekker, Job, Noble, William S

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HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps von Yan, Koon-Kiu, Yardimci, Galip Gürkan, Yan, Chengfei, Noble, William S, Gerstein, Mark

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Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes von Ma, Wenxiu, Ay, Ferhat, Lee, Choli, Gulsoy, Gunhan, Deng, Xinxian, Cook, Savannah, Hesson, Jennifer, Cavanaugh, Christopher, Ware, Carol B, Krumm, Anton, Shendure, Jay, Blau, Carl Anthony, Disteche, Christine M, Noble, William S, Duan, Zhijun

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Global mapping of protein-DNA interactions in vivo by digital genomic footprinting von Stamatoyannopoulos, John A, Hesselberth, Jay R, Chen, Xiaoyu, Zhang, Zhihong, Sabo, Peter J, Sandstrom, Richard, Reynolds, Alex P, Thurman, Robert E, Neph, Shane, Kuehn, Michael S, Noble, William S, Fields, Stanley

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Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy von Bertero, Alessandro, Fields, Paul A, Smith, Alec S T, Leonard, Andrea, Beussman, Kevin, Sniadecki, Nathan J, Kim, Deok-Ho, Tse, Hung-Fat, Pabon, Lil, Shendure, Jay, Noble, William S, Murry, Charles E

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Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome von Fang, He, Bonora, Giancarlo, Lewandowski, Jordan P., Thakur, Jitendra, Filippova, Galina N., Henikoff, Steven, Shendure, Jay, Duan, Zhijun, Rinn, John L., Deng, Xinxian, Noble, William S., Disteche, Christine M.

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Author Correction: Epiphany: predicting Hi-C contact maps from 1D epigenomic signals von Yang, Rui, Das, Arnav, Gao, Vianne R, Karbalayghareh, Alireza, Noble, William S, Bilmes, Jeffrey A, Leslie, Christina S

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Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism von Sychev, Zoi E, Hu, Alex, DiMaio, Terri A, Gitter, Anthony, Camp, Nathan D, Noble, William S, Wolf-Yadlin, Alejandro, Lagunoff, Michael

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Large-scale prediction of protein-protein interactions from structures von Hue, Martial, Riffle, Michael, Vert, Jean-Philippe, Noble, William S

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Tigerfish designs oligonucleotide-based in situ hybridization probes targeting intervals of highly repetitive DNA at the scale of genomes von Aguilar, Robin, Camplisson, Conor K., Lin, Qiaoyi, Miga, Karen H., Noble, William S., Beliveau, Brian J.

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What is a support vector machine? von Noble, William S

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