Reference databases for taxonomic assignment in metagenomics von Santamaria, Monica, Fosso, Bruno, Consiglio, Arianna, De Caro, Giorgio, Grillo, Giorgio, Licciulli, Flavio, Liuni, Sabino, Marzano, Marinella, Alonso-Alemany, Daniel, Valiente, Gabriel, Pesole, Graziano

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Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing von HORNER, David Stephen, PAVESI, Giulio, CASTRIGNANO, Tiziana, D'ONORIO DE MEO, Paolo, LIUNI, Sabino, SAMMETH, Michael, PICARDI, Ernesto, PESOLE, Graziano

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On the statistical assessment of classifiers using DNA microarray data von Ancona, N, Maglietta, R, Piepoli, A, D'Addabbo, A, Cotugno, R, Savino, M, Liuni, S, Carella, M, Pesole, G, Perri, F

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PLANT-PIs: a database for plant protease inhibitors and their genes von Leo, F. De, Volpicella, M., Licciulli, F., Liuni, S., Gallerani, R., Ceci, L. R.

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Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data von Maglietta, R., Piepoli, A., Catalano, D., Licciulli, F., Carella, M., Liuni, S., Pesole, G., Perri, F., Ancona, N.

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CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison von Castrignanò, Tiziana, Canali, Alessandro, Grillo, Giorgio, Liuni, Sabino, Mignone, Flavio, Pesole, Graziano

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The untranslated regions of eukaryotic mRNAs: Structure, function, evolution and bioinformatic tools for their analysis von PESOLE, Graziano, GRILLO, Giorgio, LARIZZA, Alessandra, LIUNI, Sabino

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Structural and functional features of eukaryotic mRNA untranslated regions von Pesole, G, Mignone, F, Gissi, C, Grillo, G, Licciulli, F, Liuni, S

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UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs von Pesole, G, Liuni, S, Grillo, G, Ippedico, M, Larizza, A, Makalowski, W, Saccone, C

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UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs von Mignone, Flavio, Grillo, Giorgio, Licciulli, Flavio, Iacono, Michele, Liuni, Sabino, Kersey, Paul J., Duarte, Jorge, Saccone, Cecilia, Pesole, Graziano

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UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002 von Pesole, Graziano, Liuni, Sabino, Grillo, Giorgio, Licciulli, Flavio, Mignone, Flavio, Gissi, Carmela, Saccone, Cecilia

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PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences von Grillo, Giorgio, Licciulli, Flavio, Liuni, Sabino, Sbisà, Elisabetta, Pesole, Graziano

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Internet resources for the functional analysis of 5′ and 3′ untranslated regions of eukaryotic mRNAs von Pesole, Graziano, Liuni, Sabino

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GeneUp: A Program to Select Short PCR Primer Pairs that Occur in Multiple Members of Sequence Lists von Pesole, G, Liuni, S, Grillo, G, Belichard, P, Trenkle, T, Welsh, J, McClelland, M

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PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance von Pesole, Graziano, Liuni, Sabino, D’Souza, Mark

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Update of AMmtDB: a database of multi-aligned metazoa mitochondrial DNA sequences von Lanave, Cecilia, Attimonelli, Marcella, De Robertis, Mariateresa, Licciulli, Flavio, Liuni, Sabino, Sbisà, Elisabetta, Saccone, Cecilia

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Comparison of Merging and Meta-Analysis as Alternative Approaches for Integrative Gene Expression Analysis von Taminau, Jonatan, Lazar, Cosmin, Meganck, Stijn, Nowé, Ann

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Regularized Least Squares Cancer classifiers from DNA microarray data von Ancona, Nicola, Maglietta, Rosalia, D'Addabbo, Annarita, Liuni, Sabino, Pesole, Graziano

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PLMItRNA, a database for higher plant mitochondrial tRNAs and tRNA genes von Ceci, Luigi R., Volpicella, Mariateresa, Liuni, Sabino, Volpetti, Vito, Licciulli, Flavio, Gallerani, Raffaele

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Computational identification of protein coding potential of conserved sequence tags through cross‐species evolutionary analysis von Mignone, Flavio, Grillo, Giorgio, Liuni, Sabino, Pesole, Graziano

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