Automated 3D structure composition for large RNAs von Popenda, Mariusz, Szachniuk, Marta, Antczak, Maciej, Purzycka, Katarzyna J, Lukasiak, Piotr, Bartol, Natalia, Blazewicz, Jacek, Adamiak, Ryszard W

Volltext

Entanglements of structure elements revealed in RNA 3D models von Popenda, Mariusz, Zok, Tomasz, Sarzynska, Joanna, Korpeta, Agnieszka, Adamiak, Ryszard W, Antczak, Maciej, Szachniuk, Marta

Volltext

RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures von Popenda, Mariusz, Szachniuk, Marta, Blazewicz, Marek, Wasik, Szymon, Burke, Edmund K, Blazewicz, Jacek, Adamiak, Ryszard W

Volltext

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures von Antczak, Maciej, Zok, Tomasz, Osowiecki, Maciej, Popenda, Mariusz, Adamiak, Ryszard W, Szachniuk, Marta

Volltext

A normal genetic variation modulates synaptic MMP‐9 protein levels and the severity of schizophrenia symptoms von Lepeta, Katarzyna, Purzycka, Katarzyna J, Pachulska‐Wieczorek, Katarzyna, Mitjans, Marina, Begemann, Martin, Vafadari, Behnam, Bijata, Krystian, Adamiak, Ryszard W, Ehrenreich, Hannelore, Dziembowska, Magdalena, Kaczmarek, Leszek

Volltext

RNApdbee 2.0: multifunctional tool for RNA structure annotation von Zok, Tomasz, Antczak, Maciej, Zurkowski, Michal, Popenda, Mariusz, Blazewicz, Jacek, Adamiak, Ryszard W, Szachniuk, Marta

Volltext

New functionality of RNAComposer: application to shape the axis of miR160 precursor structure von Antczak, Maciej, Popenda, Mariusz, Zok, Tomasz, Sarzynska, Joanna, Ratajczak, Tomasz, Tomczyk, Katarzyna, Adamiak, Ryszard Walenty, Szachniuk, Marta

Volltext

The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA von Purzycka, Katarzyna J, Pachulska-Wieczorek, Katarzyna, Adamiak, Ryszard W

Volltext

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation von Antczak, Maciej, Popenda, Mariusz, Zok, Tomasz, Zurkowski, Michal, Adamiak, Ryszard W, Szachniuk, Marta

Volltext

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme von Miao, Zhichao, Adamiak, Ryszard W, Antczak, Maciej, Batey, Robert T, Becka, Alexander J, Biesiada, Marcin, Boniecki, Michał J, Bujnicki, Janusz M, Chen, Shi-Jie, Cheng, Clarence Yu, Chou, Fang-Chieh, Ferré-D'Amaré, Adrian R, Das, Rhiju, Dawson, Wayne K, Ding, Feng, Dokholyan, Nikolay V, Dunin-Horkawicz, Stanisław, Geniesse, Caleb, Kappel, Kalli, Kladwang, Wipapat, Krokhotin, Andrey, Łach, Grzegorz E, Major, François, Mann, Thomas H, Magnus, Marcin, Pachulska-Wieczorek, Katarzyna, Patel, Dinshaw J, Piccirilli, Joseph A, Popenda, Mariusz, Purzycka, Katarzyna J, Ren, Aiming, Rice, Greggory M, Santalucia, Jr, John, Sarzynska, Joanna, Szachniuk, Marta, Tandon, Arpit, Trausch, Jeremiah J, Tian, Siqi, Wang, Jian, Weeks, Kevin M, Williams, 2nd, Benfeard, Xiao, Yi, Xu, Xiaojun, Zhang, Dong, Zok, Tomasz, Westhof, Eric

Volltext

RNApdbee--a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs von Antczak, Maciej, Zok, Tomasz, Popenda, Mariusz, Lukasiak, Piotr, Adamiak, Ryszard W, Blazewicz, Jacek, Szachniuk, Marta

Volltext

RNAComposer and RNA 3D structure prediction for nanotechnology von Biesiada, Marcin, Pachulska-Wieczorek, Katarzyna, Adamiak, Ryszard W., Purzycka, Katarzyna J.

Volltext

Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models von Gumna, Julita, Antczak, Maciej, Adamiak, Ryszard W, Bujnicki, Janusz M, Chen, Shi-Jie, Ding, Feng, Ghosh, Pritha, Li, Jun, Mukherjee, Sunandan, Nithin, Chandran, Pachulska-Wieczorek, Katarzyna, Ponce-Salvatierra, Almudena, Popenda, Mariusz, Sarzynska, Joanna, Wirecki, Tomasz, Zhang, Dong, Zhang, Sicheng, Zok, Tomasz, Westhof, Eric, Miao, Zhichao, Szachniuk, Marta, Rybarczyk, Agnieszka

Volltext

RNAssess--a web server for quality assessment of RNA 3D structures von Lukasiak, Piotr, Antczak, Maciej, Ratajczak, Tomasz, Szachniuk, Marta, Popenda, Mariusz, Adamiak, Ryszard W, Blazewicz, Jacek

Volltext

RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures von Popenda, Mariusz, Błażewicz, Marek, Szachniuk, Marta, Adamiak, Ryszard W

Volltext

RNAlyzer--novel approach for quality analysis of RNA structural models von Lukasiak, Piotr, Antczak, Maciej, Ratajczak, Tomasz, Bujnicki, Janusz M, Szachniuk, Marta, Adamiak, Ryszard W, Popenda, Mariusz, Blazewicz, Jacek

Volltext

The matrix domain contributes to the nucleic acid chaperone activity of HIV-2 Gag von Pachulska-Wieczorek, Katarzyna, Błaszczyk, Leszek, Biesiada, Marcin, Adamiak, Ryszard W, Purzycka, Katarzyna J

Volltext

The Apical Loop of the HIV-1 TAR RNA Hairpin Is Stabilized by a Cross-loop Base Pair von Kulinski, Tadeusz, Olejniczak, Mikolaj, Huthoff, Hendrik, Bielecki, Lukasz, Pachulska-Wieczorek, Katarzyna, Das, Atze T., Berkhout, Ben, Adamiak, Ryszard W.

Volltext

Bulged Adenosine Influence on the RNA Duplex Conformation in Solution von Popenda, Lukasz, Adamiak, Ryszard W, Gdaniec, Zofia

Volltext

Automated RNA 3D Structure Prediction with RNAComposer von Biesiada, Marcin, Purzycka, Katarzyna J., Szachniuk, Marta, Blazewicz, Jacek, Adamiak, Ryszard W.

Volltext