Patterns of positive selection in six Mammalian genomes von Kosiol, Carolin, Vinar, Tomás, da Fonseca, Rute R, Hubisz, Melissa J, Bustamante, Carlos D, Nielsen, Rasmus, Siepel, Adam

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Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution von Tanner, Alastair R., Fuchs, Dirk, Winkelmann, Inger E., Gilbert, M. Thomas P., Pankey, M. Sabrina, Ribeiro, Ângela M., Kocot, Kevin M., Halanych, Kenneth M., Oakley, Todd H., da Fonseca, Rute R., Pisani, Davide, Vinther, Jakob

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The adaptive evolution of the mammalian mitochondrial genome von da Fonseca, Rute R, Johnson, Warren E, O'Brien, Stephen J, Ramos, Maria João, Antunes, Agostinho

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Genome sequence and effectorome of Moniliophthora perniciosa and Moniliophthora roreri subpopulations von Barbosa, Ceslaine Santos, Fonseca, Rute R da, Batista, Thiago Mafra, Barreto, Mariana Araújo, Argolo, Caio Suzart, Carvalho, Mariana Rocha de, Amaral, Daniel Oliveira Jordão do, Silva, Edson Mário de Andrade, Arévalo-Gardini, Enrique, Hidalgo, Karina Solis, Franco, Glória Regina, Pirovani, Carlos Priminho, Micheli, Fabienne, Gramacho, Karina Peres

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Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits von Chen, Lei, Qiu, Qiang, Jiang, Yu, Wang, Kun, Lin, Zeshan, Li, Zhipeng, Bibi, Faysal, Yang, Yongzhi, Wang, Jinhuan, Nie, Wenhui, Su, Weiting, Liu, Guichun, Li, Qiye, Fu, Weiwei, Pan, Xiangyu, Liu, Chang, Yang, Jie, Zhang, Chenzhou, Yin, Yuan, Wang, Yu, Zhao, Yue, Zhang, Chen, Wang, Zhongkai, Qin, Yanli, Liu, Wei, Wang, Bao, Ren, Yandong, Zhang, Ru, Zeng, Yan, da Fonseca, Rute R, Wei, Bin, Li, Ran, Wan, Wenting, Zhao, Ruoping, Zhu, Wenbo, Wang, Yutao, Duan, Shengchang, Gao, Yun, Zhang, Yong E, Chen, Chunyan, Hvilsom, Christina, Epps, Clinton W, Chemnick, Leona G, Dong, Yang, Mirarab, Siavash, Siegismund, Hans Redlef, Ryder, Oliver A, Gilbert, M Thomas P, Lewin, Harris A, Zhang, Guojie, Heller, Rasmus, Wang, Wen

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Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins von Cappellini, Enrico, Jensen, Lars J, Szklarczyk, Damian, Ginolhac, Aurélien, da Fonseca, Rute A. R, Stafford, Thomas W, Holen, Steven R, Collins, Matthew J, Orlando, Ludovic, Willerslev, Eske, Gilbert, M. Thomas P, Olsen, Jesper V

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Molecular evolution and the role of oxidative stress in the expansion and functional diversification of cytosolic glutathione transferases von da Fonseca, Rute R, Johnson, Warren E, O'Brien, Stephen J, Vasconcelos, Vítor, Antunes, Agostinho

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Declining genetic diversity of European honeybees along the twentieth century von Espregueira Themudo, Gonçalo, Rey-Iglesia, Alba, Robles Tascón, Lucía, Bruun Jensen, Annette, da Fonseca, Rute R., Campos, Paula F.

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Introgression and disruption of migration routes have shaped the genetic integrity of wildebeest populations von Liu, Xiaodong, Lin, Long, Sinding, Mikkel-Holger S., Bertola, Laura D., Hanghøj, Kristian, Quinn, Liam, Garcia-Erill, Genís, Rasmussen, Malthe Sebro, Schubert, Mikkel, Pečnerová, Patrícia, Balboa, Renzo F., Li, Zilong, Heaton, Michael P., Smith, Timothy P. L., Pinto, Rui Resende, Wang, Xi, Kuja, Josiah, Brüniche-Olsen, Anna, Meisner, Jonas, Santander, Cindy G., Ogutu, Joseph O., Masembe, Charles, da Fonseca, Rute R., Muwanika, Vincent, Siegismund, Hans R., Albrechtsen, Anders, Moltke, Ida, Heller, Rasmus

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The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression von Melo-Ferreira, José, Vilela, Joana, Fonseca, Miguel M., da Fonseca, Rute R., Boursot, Pierre, Alves, Paulo C.

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The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758) von Gomes-Dos-Santos, André, Lopes-Lima, Manuel, Machado, André M, Marcos Ramos, António, Usié, Ana, Bolotov, Ivan N, Vikhrev, Ilya V, Breton, Sophie, Castro, L Filipe C, da Fonseca, Rute R, Geist, Juergen, Österling, Martin E, Prié, Vincent, Teixeira, Amílcar, Gan, Han Ming, Simakov, Oleg, Froufe, Elsa

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Consequences of breed formation on patterns of genomic diversity and differentiation: the case of highly diverse peripheral Iberian cattle von da Fonseca, Rute R, Ureña, Irene, Afonso, Sandra, Pires, Ana Elisabete, Jørsboe, Emil, Chikhi, Lounès, Ginja, Catarina

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Evolution of the extracytoplasmic function σ factor protein family von Pinto, Daniela, da Fonseca, Rute R

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Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus von Whitelaw, Brooke L, Strugnell, Jan M, Faou, Pierre, da Fonseca, Rute R, Hall, Nathan E, Norman, Mark, Finn, Julian, Cooke, Ira R

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Link Your Sites (LYS) Scripts: Automated Search of Protein Structures and Mapping of Sites Under Positive Selection Detected by PAML von Moreta, Lys Sanz, da Fonseca, Rute R.

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Positive selection on the killer whale mitogenome von Foote, Andrew D., Morin, Phillip A., Durban, John W., Pitman, Robert L., Wade, Paul, Willerslev, Eske, Gilbert, M. Thomas P., da Fonseca, Rute R.

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Losing Genes: The Evolutionary Remodeling of Cetacea Skin von Espregueira Themudo, Gonçalo, Alves, Luís Q., Machado, André M., Lopes-Marques, Mónica, da Fonseca, Rute R., Fonseca, Miguel, Ruivo, Raquel, Castro, L. Filipe C.

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Amino acid patterns around disulfide bonds von Marques, José R F, da Fonseca, Rute R, Drury, Brett, Melo, André

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" Out of the Can ": A Draft Genome Assembly, Liver Transcriptome, and Nutrigenomics of the European Sardine, Sardina pilchardus von Machado, André M, Tørresen, Ole K, Kabeya, Naoki, Couto, Alvarina, Petersen, Bent, Felício, Mónica, Campos, Paula F, Fonseca, Elza, Bandarra, Narcisa, Lopes-Marques, Mónica, Ferraz, Renato, Ruivo, Raquel, Fonseca, Miguel M, Jentoft, Sissel, Monroig, Óscar, da Fonseca, Rute R, C Castro, L Filipe

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Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss von Whitelaw, Brooke L, Cooke, Ira R, Finn, Julian, da Fonseca, Rute R, Ritschard, Elena A, Gilbert, M T P, Simakov, Oleg, Strugnell, Jan M

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