Saccharide breakdown and fermentation by the honey bee gut microbiome von Lee, Fredrick J., Rusch, Douglas B., Stewart, Frank J., Mattila, Heather R., Newton, Irene L. G.

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dog genome: survey sequencing and comparative analysis von Kirkness, E.F, Bafna, V, Halpern, A.L, Levy, S, Remington, K, Rusch, D.B, Delcher, A.L, Pop, M, Wang, W, Fraser, C.M

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Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage von Dupont, Chris L, Rusch, Douglas B, Yooseph, Shibu, Lombardo, Mary-Jane, Alexander Richter, R, Valas, Ruben, Novotny, Mark, Yee-Greenbaum, Joyclyn, Selengut, Jeremy D, Haft, Dan H, Halpern, Aaron L, Lasken, Roger S, Nealson, Kenneth, Friedman, Robert, Craig Venter, J

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The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples von Williamson, Shannon J, Rusch, Douglas B, Yooseph, Shibu, Halpern, Aaron L, Heidelberg, Karla B, Glass, John I, Andrews-Pfannkoch, Cynthia, Fadrosh, Douglas, Miller, Christopher S, Sutton, Granger, Frazier, Marvin, Venter, J Craig

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Exploring breast tissue microbial composition and the association with breast cancer risk factors von German, Rana, Marino, Natascia, Hemmerich, Chris, Podicheti, Ram, Rusch, Douglas B, Stiemsma, Leah T, Gao, Hongyu, Xuei, Xiaoling, Rockey, Pam, Storniolo, Anna Maria

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The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence von Mass, Shir, Cohen, Hadar, Podicheti, Ram, Rusch, Douglas B, Gerlic, Motti, Ushijima, Blake, van Kessel, Julia C, Bosis, Eran, Salomon, Dor

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How thermal challenges change gene regulation in the songbird brain and gonad: Implications for sexual selection in our changing world von Lipshutz, Sara E., Howell, Clara R., Buechlein, Aaron M., Rusch, Douglas B., Rosvall, Kimberly A., Derryberry, Elizabeth P.

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Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees von Wu, Dongying, Wu, Martin, Halpern, Aaron, Rusch, Douglas B, Yooseph, Shibu, Frazier, Marvin, Venter, J Craig, Eisen, Jonathan A

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Tissue-specific expression profiles and positive selection analysis in the tree swallow (Tachycineta bicolor) using a de novo transcriptome assembly von Bentz, Alexandra B., Thomas, Gregg W. C., Rusch, Douglas B., Rosvall, Kimberly A.

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The neurogenomic transition from territory establishment to parenting in a territorial female songbird von Bentz, Alexandra B, Rusch, Douglas B, Buechlein, Aaron, Rosvall, Kimberly A

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Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution von Díez, Beatriz, Nylander, Johan A A, Ininbergs, Karolina, Dupont, Christopher L, Allen, Andrew E, Yooseph, Shibu, Rusch, Douglas B, Bergman, Birgitta

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The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem von Inskeep, William P, Jay, Zackary J, Tringe, Susannah G, Herrgård, Markus J, Rusch, Douglas B

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Functional tradeoffs underpin salinity-driven divergence in microbial community composition von Dupont, Chris L, Larsson, John, Yooseph, Shibu, Ininbergs, Karolina, Goll, Johannes, Asplund-Samuelsson, Johannes, McCrow, John P, Celepli, Narin, Allen, Lisa Zeigler, Ekman, Martin, Lucas, Andrew J, Hagström, Åke, Thiagarajan, Mathangi, Brindefalk, Björn, Richter, Alexander R, Andersson, Anders F, Tenney, Aaron, Lundin, Daniel, Tovchigrechko, Andrey, Nylander, Johan A A, Brami, Daniel, Badger, Jonathan H, Allen, Andrew E, Rusch, Douglas B, Hoffman, Jeff, Norrby, Erling, Friedman, Robert, Pinhassi, Jarone, Venter, J Craig, Bergman, Birgitta

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Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovienii von Papudeshi, Bhavya, Rusch, Douglas B, VanInsberghe, David, Lively, Curtis M, Edwards, Robert A, Bashey, Farrah

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Characterization of Prochlorococcus clades from iron-depleted oceanic regions von Rusch, Douglas B., Martiny, Adam C., Dupont, Christopher L., Halpern, Aaron L., Venter, J. Craig

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Efficient de novo assembly of single-cell bacterial genomes from short-read data sets von Lasken, Roger S, Chitsaz, Hamidreza, Yee-Greenbaum, Joyclyn L, Tesler, Glenn, Lombardo, Mary-Jane, Dupont, Christopher L, Badger, Jonathan H, Novotny, Mark, Rusch, Douglas B, Fraser, Louise J, Gormley, Niall A, Schulz-Trieglaff, Ole, Smith, Geoffrey P, Evers, Dirk J, Pevzner, Pavel A

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Transcriptome-wide analysis of pseudouridylation in Drosophila melanogaster von Song, Wan, Podicheti, Ram, Rusch, Douglas B, Tracey, William Daniel

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Genomic and functional adaptation in surface ocean planktonic prokaryotes von Nealson, Kenneth H, Yooseph, Shibu, Rusch, Douglas B, McCrow, John P, Dupont, Christopher L, Kim, Maria, Johnson, Justin, Montgomery, Robert, Ferriera, Steve, Beeson, Karen, Williamson, Shannon J, Tovchigrechko, Andrey, Allen, Andrew E, Zeigler, Lisa A, Sutton, Granger, Eisenstadt, Eric, Rogers, Yu-Hui, Friedman, Robert, Frazier, Marvin, Venter, J. Craig

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Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park von Kozubal, Mark A, Romine, Margaret, Jennings, Ryan deM, Jay, Zack J, Tringe, Susannah G, Rusch, Doug B, Beam, Jacob P, McCue, Lee Ann, Inskeep, William P

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Co-occurring genomic capacity for anaerobic methane and dissimilatory sulfur metabolisms discovered in the Korarchaeota von McKay, Luke J., Dlakić, Mensur, Fields, Matthew W., Delmont, Tom O., Eren, A. Murat, Jay, Zackary J., Klingelsmith, Korinne B., Rusch, Douglas B., Inskeep, William P.

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