Multiscale and integrative single-cell Hi-C analysis with Higashi von Zhang, Ruochi, Zhou, Tianming, Ma, Jian

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Stealthy Control Signal Attacks in Linear Quadratic Gaussian Control Systems: Detectability Reward Tradeoff von Ruochi Zhang, Venkitasubramaniam, Parv

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Author Correction: Multiscale and integrative single-cell Hi-C analysis with Higashi von Zhang, Ruochi, Zhou, Tianming, Ma, Jian

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A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics von Li, Haoyang, Zhou, Juexiao, Li, Zhongxiao, Chen, Siyuan, Liao, Xingyu, Zhang, Bin, Zhang, Ruochi, Wang, Yu, Sun, Shiwei, Gao, Xin

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CHANGE-seq reveals genetic and epigenetic effects on CRISPR–Cas9 genome-wide activity von Lazzarotto, Cicera R., Malinin, Nikolay L., Li, Yichao, Zhang, Ruochi, Yang, Yang, Lee, GaHyun, Cowley, Eleanor, He, Yanghua, Lan, Xin, Jividen, Kasey, Katta, Varun, Kolmakova, Natalia G., Petersen, Christopher T., Qi, Qian, Strelcov, Evgheni, Maragh, Samantha, Krenciute, Giedre, Ma, Jian, Cheng, Yong, Tsai, Shengdar Q.

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SPIN reveals genome-wide landscape of nuclear compartmentalization von Wang, Yuchuan, Zhang, Yang, Zhang, Ruochi, van Schaik, Tom, Zhang, Liguo, Sasaki, Takayo, Peric-Hupkes, Daniel, Chen, Yu, Gilbert, David M., van Steensel, Bas, Belmont, Andrew S., Ma, Jian

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COVID19XrayNet: A Two-Step Transfer Learning Model for the COVID-19 Detecting Problem Based on a Limited Number of Chest X-Ray Images von Zhang, Ruochi, Guo, Zhehao, Sun, Yue, Lu, Qi, Xu, Zijian, Yao, Zhaomin, Duan, Meiyu, Liu, Shuai, Ren, Yanjiao, Huang, Lan, Zhou, Fengfeng

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The 3D Genome Structure of Single Cells von Zhou, Tianming, Zhang, Ruochi, Ma, Jian

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Predicting the antigenic evolution of SARS-COV-2 with deep learning von Han, Wenkai, Chen, Ningning, Xu, Xinzhou, Sahil, Adil, Zhou, Juexiao, Li, Zhongxiao, Zhong, Huawen, Gao, Elva, Zhang, Ruochi, Wang, Yu, Sun, Shiwei, Cheung, Peter Pak-Hang, Gao, Xin

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Severity Detection for the Coronavirus Disease 2019 (COVID-19) Patients Using a Machine Learning Model Based on the Blood and Urine Tests von Yao, Haochen, Zhang, Nan, Zhang, Ruochi, Duan, Meiyu, Xie, Tianqi, Pan, Jiahui, Peng, Ejun, Huang, Juanjuan, Zhang, Yingli, Xu, Xiaoming, Xu, Hong, Zhou, Fengfeng, Wang, Guoqing

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EnRank: An Ensemble Method to Detect Pulmonary Hypertension Biomarkers Based on Feature Selection and Machine Learning Models von Liu, Xiangju, Zhang, Yu, Fu, Chunli, Zhang, Ruochi, Zhou, Fengfeng

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Optimization of binding affinities in chemical space with generative pre-trained transformer and deep reinforcement learning [version 2; peer review: 3 approved, 2 approved with re... von Xu, Xiaopeng, Zhou, Juexiao, Zhu, Chen, Zhan, Qing, Li, Zhongxiao, Zhang, Ruochi, Wang, Yu, Liao, Xingyu, Gao, Xin

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Describe Molecules by a Heterogeneous Graph Neural Network with Transformer-like Attention for Supervised Property Predictions von Deng, Daiguo, Lei, Zengrong, Hong, Xiaobin, Zhang, Ruochi, Zhou, Fengfeng

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AB-Gen: Antibody Library Design with Generative Pre-trained Transformer and Deep Reinforcement Learning von Xu, Xiaopeng, Xu, Tiantian, Zhou, Juexiao, Liao, Xingyu, Zhang, Ruochi, Wang, Yu, Zhang, Lu, Gao, Xin

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pyHIVE, a health-related image visualization and engineering system using Python von Zhang, Ruochi, Zhao, Ruixue, Zhao, Xinyang, Wu, Di, Zheng, Weiwei, Feng, Xin, Zhou, Fengfeng

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A polygenic stacking classifier revealed the complicated platelet transcriptomic landscape of adult immune thrombocytopenia von Xu, Chengfeng, Zhang, Ruochi, Duan, Meiyu, Zhou, Yongming, Bao, Jizhang, Lu, Hao, Wang, Jie, Hu, Minghui, Hu, Zhaoyang, Zhou, Fengfeng, Zhu, Wenwei

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False Data Injection and Detection in LQG Systems: A Game Theoretic Approach von Zhang, Ruochi, Venkitasubramaniam, Parv

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Optimal Local Differentially Private Quantization von Zhang, Ruochi, Venkitasubramaniam, Parv

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Author Correction: scGHOST: identifying single-cell 3D genome subcompartments von Xiong, Kyle, Zhang, Ruochi, Ma, Jian

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scGHOST: identifying single-cell 3D genome subcompartments von Xiong, Kyle, Zhang, Ruochi, Ma, Jian

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