In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level von McDole, Katie, Guignard, Léo, Amat, Fernando, Berger, Andrew, Malandain, Grégoire, Royer, Loïc A., Turaga, Srinivas C., Branson, Kristin, Keller, Philipp J.

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Democratising deep learning for microscopy with ZeroCostDL4Mic von von Chamier, Lucas, Laine, Romain F., Jukkala, Johanna, Spahn, Christoph, Krentzel, Daniel, Nehme, Elias, Lerche, Martina, Hernández-Pérez, Sara, Mattila, Pieta K., Karinou, Eleni, Holden, Séamus, Solak, Ahmet Can, Krull, Alexander, Buchholz, Tim-Oliver, Jones, Martin L., Royer, Loïc A., Leterrier, Christophe, Shechtman, Yoav, Jug, Florian, Heilemann, Mike, Jacquemet, Guillaume, Henriques, Ricardo

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Adaptive light-sheet microscopy for long-term, high-resolution imaging in living organisms von Royer, Loïc A, Lemon, William C, Chhetri, Raghav K, Wan, Yinan, Coleman, Michael, Myers, Eugene W, Keller, Philipp J

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OpenCell: Endogenous tagging for the cartography of human cellular organization von Cho, Nathan H, Cheveralls, Keith C, Brunner, Andreas-David, Kim, Kibeom, Michaelis, André C, Raghavan, Preethi, Kobayashi, Hirofumi, Savy, Laura, Li, Jason Y, Canaj, Hera, Kim, James Y S, Stewart, Edna M, Gnann, Christian, McCarthy, Frank, Cabrera, Joana P, Brunetti, Rachel M, Chhun, Bryant B, Dingle, Greg, Hein, Marco Y, Huang, Bo, Mehta, Shalin B, Weissman, Jonathan S, Gómez-Sjöberg, Rafael, Itzhak, Daniel N, Royer, Loïc A, Mann, Matthias, Leonetti, Manuel D

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Pycro-Manager: open-source software for customized and reproducible microscope control von Pinkard, Henry, Stuurman, Nico, Ivanov, Ivan E., Anthony, Nicholas M., Ouyang, Wei, Li, Bin, Yang, Bin, Tsuchida, Mark A., Chhun, Bryant, Zhang, Grace, Mei, Ryan, Anderson, Michael, Shepherd, Douglas P., Hunt-Isaak, Ian, Dunn, Raymond L., Jahr, Wiebke, Kato, Saul, Royer, Loïc A., Thiagarajah, Jay R., Eliceiri, Kevin W., Lundberg, Emma, Mehta, Shalin B., Waller, Laura

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A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors von Lange, Merlin, Granados, Alejandro, VijayKumar, Shruthi, Bragantini, Jordão, Ancheta, Sarah, Kim, Yang-Joon, Santhosh, Sreejith, Borja, Michael, Kobayashi, Hirofumi, McGeever, Erin, Solak, Ahmet Can, Yang, Bin, Zhao, Xiang, Liu, Yang, Detweiler, Angela M., Paul, Sheryl, Theodoro, Ilan, Mekonen, Honey, Charlton, Chris, Lao, Tiger, Banks, Rachel, Xiao, Sheng, Jacobo, Adrian, Balla, Keir, Awayan, Kyle, D’Souza, Samuel, Haase, Robert, Dizeux, Alexandre, Pourquie, Olivier, Gómez-Sjöberg, Rafael, Huber, Greg, Serra, Mattia, Neff, Norma, Pisco, Angela Oliveira, Royer, Loïc A.

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Omega — harnessing the power of large language models for bioimage analysis von Royer, Loïc A.

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Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction von Belthangady, Chinmay, Royer, Loic A.

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The future of bioimage analysis: a dialog between mind and machine von Royer, Loïc A.

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ZAF, the first open source fully automated feeder for aquatic facilities von Lange, Merlin, Solak, AhmetCan, Vijay Kumar, Shruthi, Kobayashi, Hirofumi, Yang, Bin, Royer, Loïc Alain

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A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation von Patel, Avinash, Lee, Hyun O., Jawerth, Louise, Maharana, Shovamayee, Jahnel, Marcus, Hein, Marco Y., Stoynov, Stoyno, Mahamid, Julia, Saha, Shambaditya, Franzmann, Titus M., Pozniakovski, Andrej, Poser, Ina, Maghelli, Nicola, Royer, Loic A., Weigert, Martin, Myers, Eugene W., Grill, Stephan, Drechsel, David, Hyman, Anthony A., Alberti, Simon

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A practical guide to adaptive light-sheet microscopy von Royer, Loïc A., Lemon, William C., Chhetri, Raghav K., Keller, Philipp J.

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CLIJ: GPU-accelerated image processing for everyone von Haase, Robert, Royer, Loic A., Steinbach, Peter, Schmidt, Deborah, Dibrov, Alexandr, Schmidt, Uwe, Weigert, Martin, Maghelli, Nicola, Tomancak, Pavel, Jug, Florian, Myers, Eugene W.

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Self-supervised deep learning encodes high-resolution features of protein subcellular localization von Kobayashi, Hirofumi, Cheveralls, Keith C., Leonetti, Manuel D., Royer, Loic A.

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Maximizing single cell dissociation protocol for individual zebrafish embryo von VijayKumar, Shruthi, Borja, Michael, Neff, Norma, Royer, Loïc A., Lange, Merlin

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DaXi—high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy von Yang, Bin, Lange, Merlin, Millett-Sikking, Alfred, Zhao, Xiang, Bragantini, Jordão, VijayKumar, Shruthi, Kamb, Mason, Gómez-Sjöberg, Rafael, Solak, Ahmet Can, Wang, Wanpeng, Kobayashi, Hirofumi, McCarroll, Matthew N., Whitehead, Lachlan W., Fiolka, Reto P., Kornberg, Thomas B., York, Andrew G., Royer, Loic A.

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Content-aware image restoration: pushing the limits of fluorescence microscopy von Weigert, Martin, Schmidt, Uwe, Boothe, Tobias, Müller, Andreas, Dibrov, Alexandr, Jain, Akanksha, Wilhelm, Benjamin, Schmidt, Deborah, Broaddus, Coleman, Culley, Siân, Rocha-Martins, Mauricio, Segovia-Miranda, Fabián, Norden, Caren, Henriques, Ricardo, Zerial, Marino, Solimena, Michele, Rink, Jochen, Tomancak, Pavel, Royer, Loic, Jug, Florian, Myers, Eugene W.

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Neuropilin-1 Mediates SARS-CoV-2 Infection of Astrocytes in Brain Organoids, Inducing Inflammation Leading to Dysfunction and Death of Neurons von Kong, Weili, Montano, Mauricio, Corley, Michael J, Helmy, Ekram, Kobayashi, Hirofumi, Kinisu, Martin, Suryawanshi, Rahul, Luo, Xiaoyu, Royer, Loic A, Roan, Nadia R, Ott, Melanie, Ndhlovu, Lishomwa C, Greene, Warner C

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Unraveling protein networks with power graph analysis von Royer, Loïc, Reimann, Matthias, Andreopoulos, Bill, Schroeder, Michael

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Parallel hierarchies: A visualization for cross-tabulating hierarchical categories von Vosough, Zana, Hogräfer, Marius, Royer, Loïc A., Groh, Rainer, Schulz, Hans-Jörg

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