Evolution and Diversity of Transposable Elements in Vertebrate Genomes von Sotero-Caio, Cibele G., Platt, Roy N., Suh, Alexander, Ray, David A.

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Mammalian transposable elements and their impacts on genome evolution von Platt, Roy N., Vandewege, Michael W., Ray, David A.

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Rapid divergence of a gamete recognition gene promoted macroevolution of Eutheria von Roberts, Emma K, Tardif, Steve, Wright, Emily A, Platt, 2nd, Roy N, Bradley, Robert D, Hardy, Daniel M

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Prospecting for Zoonotic Pathogens by Using Targeted DNA Enrichment von Enabulele, Egie E, Le Clec'h, Winka, Roberts, Emma K, Thompson, Cody W, McDonough, Molly M, Ferguson, Adam W, Bradley, Robert D, Anderson, Timothy J C, Platt, 2nd, Roy N

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Accurate Transposable Element Annotation Is Vital When Analyzing New Genome Assemblies von Platt, 2nd, Roy N, Blanco-Berdugo, Laura, Ray, David A

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Genome sequence of Phormia regina Meigen (Diptera: Calliphoridae): implications for medical, veterinary and forensic research von Andere, Anne A, Platt, 2nd, Roy N, Ray, David A, Picard, Christine J

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Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling von Rice, Edward S, Kohno, Satomi, John, John St, Pham, Son, Howard, Jonathan, Lareau, Liana F, O'Connell, Brendan L, Hickey, Glenn, Armstrong, Joel, Deran, Alden, Fiddes, Ian, Platt, 2nd, Roy N, Gresham, Cathy, McCarthy, Fiona, Kern, Colin, Haan, David, Phan, Tan, Schmidt, Carl, Sanford, Jeremy R, Ray, David A, Paten, Benedict, Guillette, Jr, Louis J, Green, Richard E

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Comparison of genetic variation between rare and common congeners of Dipodomys with estimates of contemporary and historical effective population size von Halsey, Michaela K, Stuhler, John D, Bayona-Vásquez, Natalia J, Platt, Roy N, Goetze, Jim R, Martin, Robert E, Matocha, Kenneth G, Bradley, Robert D, Stevens, Richard D, Ray, David A

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Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats von Platt, Roy N., Faircloth, Brant C., Sullivan, Kevin A. M., Kieran, Troy J., Glenn, Travis C., Vandewege, Michael W., Lee, Thomas E., Baker, Robert J., Stevens, Richard D., Ray, David A.

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Draft genome sequence of the Tibetan antelope von Ge, Ri-Li, Cai, Qingle, Shen, Yong-Yi, San, A, Ma, Lan, Zhang, Yong, Yi, Xin, Chen, Yan, Yang, Lingfeng, Huang, Ying, He, Rongjun, Hui, Yuanyuan, Hao, Meirong, Li, Yue, Wang, Bo, Ou, Xiaohua, Xu, Jiaohui, Zhang, Yongfen, Wu, Kui, Geng, Chunyu, Zhou, Weiping, Zhou, Taicheng, Irwin, David M., Yang, Yingzhong, Ying, Liu, Bao, Haihua, Kim, Jaebum, Larkin, Denis M., Ma, Jian, Lewin, Harris A., Xing, Jinchuan, Platt, Roy N., Ray, David A., Auvil, Loretta, Capitanu, Boris, Zhang, Xiufeng, Zhang, Guojie, Murphy, Robert W., Wang, Jun, Zhang, Ya-Ping, Wang, Jian

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Molecular dissection of laboratory contamination between two schistosome populations von Jutzeler, Kathrin S, Platt, Roy N, Li, Xue, Morales, Madison, Diaz, Robbie, Le Clec'h, Winka, Chevalier, Frédéric D, Anderson, Timothy J C

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Genomic analysis of a parasite invasion: Colonization of the Americas by the blood fluke Schistosoma mansoni von Platt, Roy N., Le Clec'h, Winka, Chevalier, Frédéric D., McDew‐White, Marina, LoVerde, Philip T., Ramiro de Assis, Rafael, Oliveira, Guilherme, Kinung'hi, Safari, Djirmay, Amadou Garba, Steinauer, Michelle L., Gouvras, Anouk, Rabone, Muriel, Allan, Fiona, Webster, Bonnie L., Webster, Joanne P., Emery, Aidan M., Rollinson, David, Anderson, Timothy J. C.

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Large Numbers of Novel miRNAs Originate from DNA Transposons and Are Coincident with a Large Species Radiation in Bats von Platt, Roy N., Vandewege, Michael W., Kern, Colin, Schmidt, Carl J., Hoffmann, Federico G., Ray, David A.

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What Is Peromyscus? Evidence from nuclear and mitochondrial DNA sequences suggests the need for a new classification von Platt, Roy N., Amman, Brian R., Keith, Megan S., Thompson, Cody W., Bradley, Robert D.

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Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes von Suh, Alexander, Churakov, Gennady, Ramakodi, Meganathan P, Platt, 2nd, Roy N, Jurka, Jerzy, Kojima, Kenji K, Caballero, Juan, Smit, Arian F, Vliet, Kent A, Hoffmann, Federico G, Brosius, Jürgen, Green, Richard E, Braun, Edward L, Ray, David A, Schmitz, Jürgen

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SINE-Based Phylogenomics Reveal Extensive Introgression and Incomplete Lineage Sorting in Myotis von Korstian, Jennifer M, Paulat, Nicole S, Platt, 2nd, Roy N, Stevens, Richard D, Ray, David A

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A genomic resource for the sedentary semi-endoparasitic reniform nematode, Rotylenchulus reniformis Linford & Oliveira von Showmaker, Kurt C., Sanders, William S., Eves-van den Akker, Sebastian, Martin, Brigitte E., Platt, Roy N., Stokes, John V., Hsu, Chuan-Yu, Bartlett, Benjamin D., Peterson, Daniel G., Wubben, Martin J.

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Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis von Platt, 2nd, Roy N, Zhang, Yuhua, Witherspoon, David J, Xing, Jinchuan, Suh, Alexander, Keith, Megan S, Jorde, Lynn B, Stevens, Richard D, Ray, David A

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Identification and characterization of microRNAs (miRNAs) and their transposable element origins in the saltwater crocodile, Crocodylus porosus von Ghosh, Arnab, Platt, Roy N., Vandewege, Michael W., Tabassum, Rabia, Hsu, Chuan-Yu, Isberg, Sally R., Peterson, Daniel G., Finger, John W., Kieran, Troy J., Glenn, Travis C., Gongora, Jaime, Ray, David A.

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Pinpointing the vesper bat transposon revolution using the Miniopterus natalensis genome von Platt, 2nd, Roy N, Mangum, Sarah F, Ray, David A

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