PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences von Lescot, Magali, Déhais, Patrice, Thijs, Gert, Marchal, Kathleen, Moreau, Yves, Van de Peer, Yves, Rouzé, Pierre, Rombauts, Stephane

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SpliceMachine: predicting splice sites from high-dimensional local context representations von Degroeve, Sven, Saeys, Yvan, De Baets, Bernard, Rouzé, Pierre, Van de Peer, Yves

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How many genes are there in plants (… and why are they there)? von Sterck, Lieven, Rombauts, Stephane, Vandepoele, Klaas, Rouzé, Pierre, Van de Peer, Yves

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Versatile gene-specific sequence tags for Arabidopsis functional genomics: Trancript profiling and reverse genetics applications von Hilson, P., Allemeersch, J., Altmann, T., Aubourg, S., Avon, A., Beynon, J., Bhalerao, R. P., Bitton, F., Caboche, M., Cannoot, B., Chardakov, V., Cognet-Holliger, C., Colot, V., Crowe, M., Darimont, C., Durinck, S., Eickhoff, H., de Longevialle, A. F., Farmer, E. E., Grant, M., Kuiper, M. T. R., Lehrach, H., Leon, C., Leyva, A., Lundeberg, Joakim, Lurin, C., Moreau, Y., Nietfeld, W., Paz-Ares, J., Reymond, P., Rouze, P., Sandberg, G., Segura, M. D., Serizet, C., Tabrett, A., Taconnat, L., Thareau, V., Van Hummelen, P., Vercruysse, S., Vuylsteke, M., Weingartner, M., Weisbeek, P. J., Wirta, Valtteri, Wittink, F. R. A., Zabeau, M., Small, I.

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EST Data Suggest That Poplar Is an Ancient Polyploid von Sterck, Lieven, Rombauts, Stephane, Jansson, Stefan, Sterky, Fredrik, Rouzé, Pierre, Van de Peer, Yves

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PlantCARE, a plant cis-acting regulatory element database von Rombauts, Stephane, Déhais, Patrice, Van Montagu, Marc, Rouzé, Pierre

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Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) von Tuskan, G.A, DiFazio, S, Jansson, S, Bohlmann, J, Hellsten, U, Putnam, N, Ralph, S, Rombauts, S, Salamov, A, Schein, J, Sterck, L, Aerts, A, Bhalerao, R.R, Bhalerao, R.P, Blaudez, D, Boerjan, W, Brun, A, Brunner, A, Busov, V, Campbell, M, Carlson, J, Chalot, M, Chapman, J, Chen, G.-L, Cooper, D, Coutinho, P.M, Covert, S, Cronk, Q, Cunningham, R, Davis, J, Degroeve, S, Déjardin, A, dePamphilis, C, Detter, J, Dirks, B, Dubchak, I, Ehlting, J, Ellis, B, Gendler, K, Goodstein, D, Gribskov, M, Grimwood, J, Groover, A, Gunter, L, Hamberger, B, Heinze, B, Helariutta, Y, Holligan, D, Holt, R, Huang, W, Islam-Faridi, N, Jones, S, Jones-Rhoades, M, Jorgensen, R, Kangasjärvi, J, Karlsson, J, Kelleher, C, Kirkpatrick, R, Kirst, M, Kohler, A, Kalluri, U, Larimer, F, Leebens-Mack, J, Leplé, J.-C, Locascio, P, Lou, Y, Martin, F, Montanini, B, Nelson, D.R, Nelson, C, Nieminen, K, Nilsson, O, Pereda, V, Peter, G, Poliakov, A, Razumovskaya, J, Richardson, P, Rinaldi, C, Ritland, K, Rouzé, P, Ryaboy, D, Schrader, J, Segerman, B, Shin, H, Siddiqui, A, Sterky, F, Terry, A, Tsai, C.-J, Uberbacher, E, Unneberg, P, Vahala, J, Wall, K, Wessler, S, Yang, G, Yin, T, Douglas, C, Marra, M, Sandberg, G, Peer, Y. Van de, Rokhsar, D

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A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling von Thijs, Gert, Lescot, Magali, Marchal, Kathleen, Rombauts, Stephane, De Moor, Bart, Rouzé, Pierre, Moreau, Yves

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genome of Laccaria bicolor provides insights into mycorrhizal symbiosis von Martin, F, Aerts, A, Ahrén, D, Brun, A, Danchin, E.G.J, Duchaussoy, F, Gibon, J, Kohler, A, Lindquist, E, Pereda, V

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Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences von Bonnet, Eric, Wuyts, Jan, Rouzé, Pierre, Van de Peer, Yves

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Current methods of gene prediction, their strengths and weaknesses von Mathé, Catherine, Sagot, Marie‐France, Schiex, Thomas, Rouzé, Pierre

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The sense of naturally transcribed antisense RNAs in plants von Terryn, Nancy, Rouzé, Pierre

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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features von Derelle, E, Ferraz, C, Rombauts, S, Rouze, P, Worden, A.Z, Robbens, S, Partensky, F, Degroeve, S, Echeynie, S, Cooke, R

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A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors in Melampsora larici-populina (Poplar Leaf Rust) von HACQUARD, Stéphane, JOLY, David L, FREY, Pascal, DE PEER, Yves Van, ROUZE, Pierre, MARTIN, Francis, HAMELIN, Richard C, DUPLESSIS, Sébastien, LIN, Yao-Cheng, TISSERANT, Emilie, FEAU, Nicolas, DELARUELLE, Christine, LEGUE, Valérie, KOHLER, Annegret, TANGUAY, Philippe, PETRE, Benjamin

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Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas von Worden, Alexandra Z, Lee, Jae-Hyeok, Mock, Thomas, Rouzé, Pierre, Simmons, Melinda P, Aerts, Andrea L, Allen, Andrew E, Cuvelier, Marie L, Derelle, Evelyne, Everett, Meredith V, Foulon, Elodie, Grimwood, Jane, Gundlach, Heidrun, Henrissat, Bernard, Napoli, Carolyn, McDonald, Sarah M, Parker, Micaela S, Rombauts, Stephane, Salamov, Aasf, Von Dassow, Peter, Badger, Jonathan H, Coutinho, Pedro M, Demir, Elif, Dubchak, Inna, Gentemann, Chelle, Eikrem, Wenche, Gready, Jill E, John, Uwe, Lanier, William, Lindquist, Erika A, Lucas, Susan, Mayer, Klaus F.X, Moreau, Herve, Not, Fabrice, Otillar, Robert, Panaud, Olivier, Pangilinan, Jasmyn, Paulsen, Ian, Piegu, Benoit, Poliakov, Aaron, Robbens, Steven, Schmutz, Jeremy, Toulza, Eve, Wyss, Tania, Zelensky, Alexander, Zhou, Kemin, Armbrust, E. Virginia, Bhattacharya, Debashish, Goodenough, Ursula W, Van de Peer, Yves, Grigoriev, Igor V

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Genome-Wide Analysis of Core Cell Cycle Genes in Arabidopsis von Vandepoele, Klaas, Raes, Jeroen, De Veylder, Lieven, Rouzé, Pierre, Rombauts, Stephane, Inzé, Dirk

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The Tiny Eukaryote Ostreococcus Provides Genomic Insights into the Paradox of Plankton Speciation von Palenik, Brian, Grimwood, Jane, Aerts, Andrea, Rouzé, Pierre, Salamov, Asaf, Putnam, Nicholas, Dupont, Chris, Jorgensen, Richard, Derelle, Evelyne, Rombauts, Stephane, Zhou, Kemin, Otillar, Robert, Merchant, Sabeeha S., Podell, Sheila, Gaasterland, Terry, Napoli, Carolyn, Gendler, Karla, Manuell, Andrea, Tai, Vera, Vallon, Olivier, Piganeau, Gwenael, Jancek, Séverine, Heijde, Marc, Jabbari, Kamel, Bowler, Chris, Lohr, Martin, Robbens, Steven, Werner, Gregory, Dubchak, Inna, Pazour, Gregory J., Ren, Qinghu, Paulsen, Ian, Delwiche, Chuck, Schmutz, Jeremy, Rokhsar, Daniel, Van de Peer, Yves, Moreau, Hervé, Grigoriev, Igor V.

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Higher Intron Loss Rate in Arabidopsis thaliana Than A. lyrata Is Consistent with Stronger Selection for a Smaller Genome von Fawcett, Jeffrey A., Rouzé, Pierre, Van de Peer, Yves

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Use of a proteome strategy for tagging proteins present at the plasma membrane von Santoni, Véronique, Rouquié, David, Doumas, Patrick, Mansion, Monique, Boutry, Marc, Degand, Hervé, Dupree, Paul, Packman, Len, Sherrier, Janine, Prime, Tracy, Bauw, Guy, Posada, Esmeralda, Rouzé, Pierre, Dehais, Patrice, Sahnoun, Ilhem, Barlier, Isabelle, Rossignol, Michel

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Plant cyclins: a unified nomenclature for plant A-, B- and D-type cyclins based on sequence organization von Renaudin, J P, Doonan, J H, Freeman, D, Hashimoto, J, Hirt, H, Inzé, D, Jacobs, T, Kouchi, H, Rouzé, P, Sauter, M, Savouré, A, Sorrell, D A, Sundaresan, V, Murray, J A

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