Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology von Mellmann, Alexander, Harmsen, Dag, Cummings, Craig A, Zentz, Emily B, Leopold, Shana R, Rico, Alain, Prior, Karola, Szczepanowski, Rafael, Ji, Yongmei, Zhang, Wenlan, McLaughlin, Stephen F, Henkhaus, John K, Leopold, Benjamin, Bielaszewska, Martina, Prager, Rita, Brzoska, Pius M, Moore, Richard L, Guenther, Simone, Rothberg, Jonathan M, Karch, Helge

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Ultrasound-on-chip platform for medical imaging, analysis, and collective intelligence von Rothberg, Jonathan M., Ralston, Tyler S., Rothberg, Alex G., Martin, John, Zahorian, Jaime S., Alie, Susan A., Sanchez, Nevada J., Chen, Kailiang, Chen, Chao, Thiele, Karl, Grosjean, David, Yang, Jungwook, Bao, Liewei, Schneider, Rob, Schaetz, Sebastian, Meyer, Christophe, Neben, Abraham, Ryan, Bob, Petrus, J. R., Lutsky, Joe, McMahill, Dan, Corteville, Gregory, Hageman, Matthew R., Miller, Larry, Fife, Keith G.

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Progress in Ion Torrent semiconductor chip based sequencing von Merriman, Barry, R&D Team, Ion Torrent, Rothberg, Jonathan M.

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Acidity Generated by the Tumor Microenvironment Drives Local Invasion von ESTRELLA, Veronica, TINGAN CHEN, JOHNSON, Joseph, GATENBY, Robert A, GILLIES, Robert J, LLOYD, Mark, WOJTKOWIAK, Jonathan, CORNNELL, Heather H, IBRAHIM-HASHIM, Arig, BAILEY, Kate, BALAGURUNATHAN, Yoganand, ROTHBERG, Jennifer M, SLOANE, Bonnie F

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Droplet microfluidic technology for single-cell high-throughput screening von Brouzes, Eric, Medkova, Martina, Savenelli, Neal, Marran, Dave, Twardowski, Mariusz, Hutchison, J. Brian, Rothberg, Jonathan M, Link, Darren R, Perrimon, Norbert, Samuels, Michael L

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Impaired Mitochondrial Dynamics and Mitophagy in Neuronal Models of Tuberous Sclerosis Complex von Ebrahimi-Fakhari, Darius, Saffari, Afshin, Wahlster, Lara, Di Nardo, Alessia, Turner, Daria, Lewis, Tommy L., Conrad, Christopher, Rothberg, Jonathan M., Lipton, Jonathan O., Kölker, Stefan, Hoffmann, Georg F., Han, Min-Joon, Polleux, Franck, Sahin, Mustafa

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Gaining confidence in high-throughput protein interaction networks von Bader, Joel S, Chaudhuri, Amitabha, Rothberg, Jonathan M, Chant, John

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A Complete Neandertal Mitochondrial Genome Sequence Determined by High-Throughput Sequencing von Green, Richard E., Malaspinas, Anna-Sapfo, Krause, Johannes, Briggs, Adrian W., Johnson, Philip L.F., Uhler, Caroline, Meyer, Matthias, Good, Jeffrey M., Maricic, Tomislav, Stenzel, Udo, Prüfer, Kay, Siebauer, Michael, Burbano, Hernán A., Ronan, Michael, Rothberg, Jonathan M., Egholm, Michael, Rudan, Pavao, Brajković, Dejana, Kućan, Željko, Gušić, Ivan, Wikström, Mårten, Laakkonen, Liisa, Kelso, Janet, Slatkin, Montgomery, Pääbo, Svante

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Chronic Autophagy Is a Cellular Adaptation to Tumor Acidic pH Microenvironments von WOJTKOWIAK, Jonathan W, ROTHBERG, Jennifer M, KUMAR, Virendra, SCHRAMM, Karla J, HALLER, Edward, PROEMSEY, Joshua B, LLOYD, Mark C, SLOANE, Bonnie F, GILLIES, Robert J

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The complete genome of an individual by massively parallel DNA sequencing von Lupski, James R, Rothberg, Jonathan M, Shen, Yufeng, Chen, Yi-Ju, Turcotte, Cynthia L, Tartaro, Karrie, Irzyk, Gerard P, Wheeler, David A, Gomes, Xavier, Yuan, Ye, Qin, Xiang, Chinault, Craig, Weinstock, George M, Song, Xing-zhi, Chen, Lei, Srinivasan, Maithreyan, He, Wen, Liu, Yue, Muzny, Donna M, Gibbs, Richard A, Niazi, Faheem, Margulies, Marcel, Roth, G. Thomas, Makhijani, Vinod, Nazareth, Lynne, McGuire, Amy, Egholm, Michael

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Low-Abundance Drug-Resistant Viral Variants in Chronically HIV-Infected, Antiretroviral Treatment–Naive Patients Significantly Impact Treatment Outcomes von Simen, Birgitte B., Simons, Jan Fredrik, Hullsiek, Katherine Huppler, Novak, Richard M., MacArthur, Rodger D., Baxter, John D., Huang, Chunli, Lubeski, Christine, Turenchalk, Gregory S., Braverman, Michael S., Desany, Brian, Rothberg, Jonathan M., Egholm, Michael

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High-Throughput Quantitative Polymerase Chain Reaction in Picoliter Droplets von Kiss, Margaret Macris, Ortoleva-Donnelly, Lori, Beer, N. Reginald, Warner, Jason, Bailey, Christopher G, Colston, Bill W, Rothberg, Jonathon M, Link, Darren R, Leamon, John H

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Analysis of one million base pairs of Neanderthal DNA von Ronan, Michael T, Egholm, Michael, Paunovic, Maja, Pääbo, Svante, Green, Richard E, Ptak, Susan E, Rothberg, Jonathan M, Briggs, Adrian W, Simons, Jan F, Krause, Johannes, Du, Lei

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Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing von Pinard, Robert, de Winter, Alex, Sarkis, Gary J, Gerstein, Mark B, Tartaro, Karrie R, Plant, Ramona N, Egholm, Michael, Rothberg, Jonathan M, Leamon, John H

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A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae von Fields, Stanley, Uetz, Peter, Giot, Loic, Cagney, Gerard, Mansfield, Traci A, Judson, Richard S, Knight, James R, Lockshon, Daniel, Narayan, Vaibhav, Srinivasan, Maithreyan, Pochart, Pascale, Qureshi-Emili, Alia, Li, Ying, Godwin, Brian, Conover, Diana, Kalbfleisch, Theodore, Vijayadamodar, Govindan, Yang, Meijia, Johnston, Mark, Rothberg, Jonathan M

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A decision model to estimate a risk threshold for venous thromboembolism prophylaxis in hospitalized medical patients von Le, P., Martinez, K. A., Pappas, M. A., Rothberg, M. B.

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Acid-Mediated Tumor Proteolysis: Contribution of Cysteine Cathepsins von Rothberg, Jennifer M, Bailey, Kate M, Wojtkowiak, Jonathan W, Ben-Nun, Yael, Bogyo, Matthew, Weber, Ekkehard, Moin, Kamiar, Blum, Galia, Mattingly, Raymond R, Gillies, Robert J, Sloane, Bonnie F

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Global neuropathologic severity of Alzheimer's disease and locus coeruleus vulnerability influences plasma phosphorylated tau levels von Murray, Melissa E, Moloney, Christina M, Kouri, Naomi, Syrjanen, Jeremy A, Matchett, Billie J, Rothberg, Darren M, Tranovich, Jessica F, Sirmans, Tiffany N Hicks, Wiste, Heather J, Boon, Baayla D C, Nguyen, Aivi T, Reichard, R Ross, Dickson, Dennis W, Lowe, Val J, Dage, Jeffrey L, Petersen, Ronald C, Jack, Jr, Clifford R, Knopman, David S, Vemuri, Prashanthi, Graff-Radford, Jonathan, Mielke, Michelle M

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Cost-Effectiveness of a Vaccine to Prevent Herpes Zoster and Postherpetic Neuralgia in Older Adults von Rothberg, Michael B., Virapongse, Anunta, Smith, Kenneth J.

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A Protein Interaction Map of Drosophila melanogaster von Giot, L., Bader, J. S., Brouwer, C., Chaudhuri, A., Kuang, B., Li, Y., Hao, Y. L., Ooi, C. E., Godwin, B., Vitols, E., Vijayadamodar, G., Pochart, P., Machineni, H., Welsh, M., Kong, Y., Zerhusen, B., Malcolm, R., Varrone, Z., Collis, A., Minto, M., Burgess, S., McDaniel, L., Stimpson, E., Spriggs, F., Williams, J., Neurath, K., Ioime, N., Agee, M., Voss, E., Furtak, K., Renzulli, R., Aanensen, N., Carrolla, S., Bickelhaupt, E., Lazovatsky, Y., DaSilva, A., Zhong, J., Stanyon, C. A., Finley, R. L., White, K. P., Braverman, M., Jarvie, T., Gold, S., Leach, M., Knight, J., Shimkets, R. A., McKenna, M. P., Chant, J., Rothberg, J. M.

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