PyClone-VI: scalable inference of clonal population structures using whole genome data von Gillis, Sierra, Roth, Andrew

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Dynamics of genomic clones in breast cancer patient xenografts at single-cell resolution von Eirew, Peter, Steif, Adi, Khattra, Jaswinder, Ha, Gavin, Yap, Damian, Farahani, Hossein, Gelmon, Karen, Chia, Stephen, Mar, Colin, Wan, Adrian, Laks, Emma, Biele, Justina, Shumansky, Karey, Rosner, Jamie, McPherson, Andrew, Nielsen, Cydney, Roth, Andrew J. L., Lefebvre, Calvin, Bashashati, Ali, de Souza, Camila, Siu, Celia, Aniba, Radhouane, Brimhall, Jazmine, Oloumi, Arusha, Osako, Tomo, Bruna, Alejandra, Sandoval, Jose L., Algara, Teresa, Greenwood, Wendy, Leung, Kaston, Cheng, Hongwei, Xue, Hui, Wang, Yuzhuo, Lin, Dong, Mungall, Andrew J., Moore, Richard, Zhao, Yongjun, Lorette, Julie, Nguyen, Long, Huntsman, David, Eaves, Connie J., Hansen, Carl, Marra, Marco A., Caldas, Carlos, Shah, Sohrab P., Aparicio, Samuel

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Psychiatric considerations in the oncology setting von Mehta, Reema D., Roth, Andrew J.

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PyClone: statistical inference of clonal population structure in cancer von Roth, Andrew, Khattra, Jaswinder, Yap, Damian, Wan, Adrian, Laks, Emma, Biele, Justina, Ha, Gavin, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P

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Divergent modes of clonal spread and intraperitoneal mixing in high-grade serous ovarian cancer von McPherson, Andrew, Roth, Andrew, Laks, Emma, Masud, Tehmina, Bashashati, Ali, Zhang, Allen W, Ha, Gavin, Biele, Justina, Yap, Damian, Wan, Adrian, Prentice, Leah M, Khattra, Jaswinder, Smith, Maia A, Nielsen, Cydney B, Mullaly, Sarah C, Kalloger, Steve, Karnezis, Anthony, Shumansky, Karey, Siu, Celia, Rosner, Jamie, Chan, Hector Li, Ho, Julie, Melnyk, Nataliya, Senz, Janine, Yang, Winnie, Moore, Richard, Mungall, Andrew J, Marra, Marco A, Bouchard-Côté, Alexandre, Gilks, C Blake, Huntsman, David G, McAlpine, Jessica N, Aparicio, Samuel, Shah, Sohrab P

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Assessing depression in a geriatric cancer population von Saracino, Rebecca M., Weinberger, Mark I., Roth, Andrew J., Hurria, Arti, Nelson, Christian J.

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Single cell preparations of Mycobacterium tuberculosis damage the mycobacterial envelope and disrupt macrophage interactions von Mittal, Ekansh, Roth, Andrew T, Seth, Anushree, Singamaneni, Srikanth, Beatty, Wandy, Philips, Jennifer A

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Interfaces of Malignant and Immunologic Clonal Dynamics in Ovarian Cancer von Zhang, Allen W., McPherson, Andrew, Milne, Katy, Kroeger, David R., Hamilton, Phineas T., Miranda, Alex, Funnell, Tyler, Little, Nicole, de Souza, Camila P.E., Laan, Sonya, LeDoux, Stacey, Cochrane, Dawn R., Lim, Jamie L.P., Yang, Winnie, Roth, Andrew, Smith, Maia A., Ho, Julie, Tse, Kane, Zeng, Thomas, Shlafman, Inna, Mayo, Michael R., Moore, Richard, Failmezger, Henrik, Heindl, Andreas, Wang, Yi Kan, Bashashati, Ali, Grewal, Diljot S., Brown, Scott D., Lai, Daniel, Wan, Adrian N.C., Nielsen, Cydney B., Huebner, Curtis, Tessier-Cloutier, Basile, Anglesio, Michael S., Bouchard-Côté, Alexandre, Yuan, Yinyin, Wasserman, Wyeth W., Gilks, C. Blake, Karnezis, Anthony N., Aparicio, Samuel, McAlpine, Jessica N., Huntsman, David G., Holt, Robert A., Nelson, Brad H., Shah, Sohrab P.

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Histological Transformation and Progression in Follicular Lymphoma: A Clonal Evolution Study von Kridel, Robert, Chan, Fong Chun, Mottok, Anja, Boyle, Merrill, Farinha, Pedro, Tan, King, Meissner, Barbara, Bashashati, Ali, McPherson, Andrew, Roth, Andrew, Shumansky, Karey, Yap, Damian, Ben-Neriah, Susana, Rosner, Jamie, Smith, Maia A, Nielsen, Cydney, Giné, Eva, Telenius, Adele, Ennishi, Daisuke, Mungall, Andrew, Moore, Richard, Morin, Ryan D, Johnson, Nathalie A, Sehn, Laurie H, Tousseyn, Thomas, Dogan, Ahmet, Connors, Joseph M, Scott, David W, Steidl, Christian, Marra, Marco A, Gascoyne, Randy D, Shah, Sohrab P

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Single-cell profiling reveals a memory B cell-like subtype of follicular lymphoma with increased transformation risk von Wang, Xuehai, Nissen, Michael, Gracias, Deanne, Kusakabe, Manabu, Simkin, Guillermo, Jiang, Aixiang, Duns, Gerben, Sarkozy, Clementine, Hilton, Laura, Chavez, Elizabeth A., Segat, Gabriela C., Wong, Rachel, Kim, Jubin, Aoki, Tomohiro, Islam, Rashedul, May, Christina, Hung, Stacy, Tyshchenko, Kate, Brinkman, Ryan R., Hirst, Martin, Karsan, Aly, Freeman, Ciara, Sehn, Laurie H., Morin, Ryan D., Roth, Andrew J., Savage, Kerry J., Craig, Jeffrey W., Shah, Sohrab P., Steidl, Christian, Scott, David W., Weng, Andrew P.

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Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing von Morin, Ryan D., Mungall, Karen, Pleasance, Erin, Mungall, Andrew J., Goya, Rodrigo, Huff, Ryan D., Scott, David W., Ding, Jiarui, Roth, Andrew, Chiu, Readman, Corbett, Richard D., Chan, Fong Chun, Mendez-Lago, Maria, Trinh, Diane L., Bolger-Munro, Madison, Taylor, Greg, Hadj Khodabakhshi, Alireza, Ben-Neriah, Susana, Pon, Julia, Meissner, Barbara, Woolcock, Bruce, Farnoud, Noushin, Rogic, Sanja, Lim, Emilia L., Johnson, Nathalie A., Shah, Sohrab, Jones, Steven, Steidl, Christian, Holt, Robert, Birol, Inanc, Moore, Richard, Connors, Joseph M., Gascoyne, Randy D., Marra, Marco A.

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The clonal and mutational evolution spectrum of primary triple-negative breast cancers von Shah, Sohrab P., Roth, Andrew, Goya, Rodrigo, Oloumi, Arusha, Ha, Gavin, Zhao, Yongjun, Turashvili, Gulisa, Ding, Jiarui, Tse, Kane, Haffari, Gholamreza, Bashashati, Ali, Prentice, Leah M., Khattra, Jaswinder, Burleigh, Angela, Yap, Damian, Bernard, Virginie, McPherson, Andrew, Shumansky, Karey, Crisan, Anamaria, Giuliany, Ryan, Heravi-Moussavi, Alireza, Rosner, Jamie, Lai, Daniel, Birol, Inanc, Varhol, Richard, Tam, Angela, Dhalla, Noreen, Zeng, Thomas, Ma, Kevin, Chan, Simon K., Griffith, Malachi, Moradian, Annie, Cheng, S.-W. Grace, Morin, Gregg B., Watson, Peter, Gelmon, Karen, Chia, Stephen, Chin, Suet-Feung, Curtis, Christina, Rueda, Oscar M., Pharoah, Paul D., Damaraju, Sambasivarao, Mackey, John, Hoon, Kelly, Harkins, Timothy, Tadigotla, Vasisht, Sigaroudinia, Mahvash, Gascard, Philippe, Tlsty, Thea, Costello, Joseph F., Meyer, Irmtraud M., Eaves, Connie J., Wasserman, Wyeth W., Jones, Steven, Huntsman, David, Hirst, Martin, Caldas, Carlos, Marra, Marco A., Aparicio, Samuel

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Clonal genotype and population structure inference from single-cell tumor sequencing von Roth, Andrew, McPherson, Andrew, Laks, Emma, Biele, Justina, Yap, Damian, Wan, Adrian, Smith, Maia A, Nielsen, Cydney B, McAlpine, Jessica N, Aparicio, Samuel, Bouchard-Côté, Alexandre, Shah, Sohrab P

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The Effects of Steep Trendelenburg Positioning on Intraocular Pressure During Robotic Radical Prostatectomy von Awad, Hamdy, Santilli, Scott, Ohr, Matthew, Roth, Andrew, Yan, Wendy, Fernandez, Soledad, Roth, Steven, Patel, Vipul

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Distinct evolutionary trajectories of primary high-grade serous ovarian cancers revealed through spatial mutational profiling von Bashashati, Ali, Ha, Gavin, Tone, Alicia, Ding, Jiarui, Prentice, Leah M, Roth, Andrew, Rosner, Jamie, Shumansky, Karey, Kalloger, Steve, Senz, Janine, Yang, Winnie, McConechy, Melissa, Melnyk, Nataliya, Anglesio, Michael, Luk, Margaret TY, Tse, Kane, Zeng, Thomas, Moore, Richard, Zhao, Yongjun, Marra, Marco A, Gilks, Blake, Yip, Stephen, Huntsman, David G, McAlpine, Jessica N, Shah, Sohrab P

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Towards a Comprehensive Catalog of Zebrafish Behavior 1.0 and Beyond von Kalueff, Allan V., Gebhardt, Michael, Stewart, Adam Michael, Cachat, Jonathan M., Brimmer, Mallorie, Chawla, Jonathan S., Craddock, Cassandra, Kyzar, Evan J., Roth, Andrew, Landsman, Samuel, Gaikwad, Siddharth, Robinson, Kyle, Baatrup, Erik, Tierney, Keith, Shamchuk, Angela, Norton, William, Miller, Noam, Nicolson, Teresa, Braubach, Oliver, Gilman, Charles P., Pittman, Julian, Rosemberg, Denis B., Gerlai, Robert, Echevarria, David, Lamb, Elisabeth, Neuhauss, Stephan C.F., Weng, Wei, Bally-Cuif, Laure, Schneider, and the Zebrafish Neuroscience Research Consortium (ZNRC), Henning

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GroEL actively stimulates folding of the endogenous substrate protein PepQ von Weaver, Jeremy, Jiang, Mengqiu, Roth, Andrew, Puchalla, Jason, Zhang, Junjie, Rye, Hays S.

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The Association Between Erectile Dysfunction and Depressive Symptoms in Men Treated for Prostate Cancer von Nelson, Christian J., Mulhall, John P., Roth, Andrew J.

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Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer von Ha, Gavin, Roth, Andrew, Lai, Daniel, Bashashati, Ali, Ding, Jiarui, Goya, Rodrigo, Giuliany, Ryan, Rosner, Jamie, Oloumi, Arusha, Shumansky, Karey, Chin, Suet-Feung, Turashvili, Gulisa, Hirst, Martin, Caldas, Carlos, Marra, Marco A, Aparicio, Samuel, Shah, Sohrab P

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Cognitive Effects of Hormone Therapy in Men With Prostate Cancer : A Review von NELSON, Christian J, LEE, Jennifer S, GAMBOA, Maria C, ROTH, Andrew J

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